Browse Element(s) Details


Os.38006.1.S1_at

Description gb:AK072126.1
DB_XREF= gi:32982149
TID=Os.38006.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.38006 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013124O10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013124O10, full insert sequence.
FL= gb:AK072126.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2053011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20490NANA3+11582947..11587267retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g20500Os.5812.1.S1_at11/113+11592064..11593574F-box domain containing protein, expressed
LOC_Os03g20520Os.10805.1.S1_at11/113+11600755..11606684Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os03g20530Os.38006.1.S1_at11/113+11608207..11614392expressed protein
LOC_Os03g20540OsAffx.12951.1.S1_at11/113+11620533..11620897hypothetical protein
LOC_Os03g20550Os.33131.1.A1_at11/113+11629657..11630977WRKY DNA binding domain containing protein, expressed
LOC_Os03g20560Os.23243.2.S1_at11/113+11631798..11632749lipoate-protein ligase, putative, expressed
LOC_Os03g20570Os.23243.1.A1_a_at11/113+11632832..11635444Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os03g20570OsAffx.28912.2.S1_at6/113+11632832..11635444Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os03g20580OsAffx.3283.1.S1_at11/113+11639233..11643090expressed protein
LOC_Os03g20580Os.57428.1.S1_x_at11/113+11639233..11643090expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38006.1.S1_at--1026--8151Chr03:11608658..11608682 (25 bp)
GGAACTCGCGGTTGACATTAACAAA
LOC_Os03g20530
Os.38006.1.S1_at--1144--5311Chr03:11608509..11608533 (25 bp)
GAAGTGGATAAGTGGATCACCCATG
LOC_Os03g20530
Os.38006.1.S1_at--545--391Chr03:11608494..11608518 (25 bp)
ATCACCCATGTGTATATTAGCCTGT
LOC_Os03g20530
Os.38006.1.S1_at--83--5231Chr03:11608396..11608420 (25 bp)
GAATACTTGTAGATTTCTGGCCAAT
LOC_Os03g20530
Os.38006.1.S1_at--695--8451Chr03:11608379..11608403 (25 bp)
TGGCCAATGCCATGCCGCAGAAGTG
LOC_Os03g20530
Os.38006.1.S1_at--390--3191Chr03:11608311..11608335 (25 bp)
CAATATGTGTATTTATCCTGGGTAT
LOC_Os03g20530
Os.38006.1.S1_at--50--3591Chr03:11608284..11608308 (25 bp)
CATTATATGAGTTTTCCCTTTTCTT
LOC_Os03g20530
Os.38006.1.S1_at--224--10331Chr03:11608265..11608289 (25 bp)
TTTCTTCTCTTTTTGATCTGTGTAG
LOC_Os03g20530
Os.38006.1.S1_at--568--10771Chr03:11608253..11608277 (25 bp)
TTGATCTGTGTAGACCTTCCAGTCC
LOC_Os03g20530
Os.38006.1.S1_at--324--4311Chr03:11608239..11608263 (25 bp)
CCTTCCAGTCCTTTATACAGCTAGA
LOC_Os03g20530
Os.38006.1.S1_at--928--4011Chr03:11608214..11608238 (25 bp)
CGTATCTATACAGCCAATTTCTCCT
LOC_Os03g20530
Target Sequence 
GGAACTCGCGGTTGACATTAACAAAGCAAAGGAACAATATGAGAATGTGAAGTTAAAGAACATGGGAAAGTGAATAAGTT
CGACAAAGTCAGACCAAAGGAACTAATTTCTGGAAGGAAGAATGGGCTACAATAACTCAAAGCCATTTAGAAGTGGATAA
GTGGATCACCCATGTGTATATTAGCCTGTTTAAACAATAGGTATAAATTACTGTTACTTTTCTTTTTGGGTTCAGTTTGC
AAGATAGGTTTAGGTGGGAGAGGAATACTTGTAGATTTCTGGCCAATGCCATGCCGCAGAAGTGTAAATCTGAGGTTTAG
GTAAAATTAAACTGATGGTGGGGGATACAATATGTGTATTTATCCTGGGTATATCATTATATGAGTTTTCCCTTTTCTTC
TCTTTTTGATCTGTGTAGACCTTCCAGTCCTTTATACAGCTAGACGTATCTATACAGCCAATTTCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38006.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis