Browse Element(s) Details


OsAffx.12951.1.S1_at

Description tigr:9631.m02040
TID=OsAffx.12951.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2054011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20520Os.10805.1.S1_at11/113+11600755..11606684Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os03g20530Os.38006.1.S1_at11/113+11608207..11614392expressed protein
LOC_Os03g20540OsAffx.12951.1.S1_at11/113+11620533..11620897hypothetical protein
LOC_Os03g20550Os.33131.1.A1_at11/113+11629657..11630977WRKY DNA binding domain containing protein, expressed
LOC_Os03g20560Os.23243.2.S1_at11/113+11631798..11632749lipoate-protein ligase, putative, expressed
LOC_Os03g20570Os.23243.1.A1_a_at11/113+11632832..11635444Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os03g20570OsAffx.28912.2.S1_at6/113+11632832..11635444Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os03g20580OsAffx.3283.1.S1_at11/113+11639233..11643090expressed protein
LOC_Os03g20580Os.57428.1.S1_x_at11/113+11639233..11643090expressed protein
LOC_Os03g20590OsAffx.25167.1.S1_at11/113+11645158..11646130hypothetical protein
LOC_Os03g20590OsAffx.6152.1.A1_at1/113+11645158..11646130hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12951.1.S1_at--132--7551Chr03:11620674..11620698 (25 bp)
GGGCGTTAATCACAGAACAACCAGC
LOC_Os03g20540
OsAffx.12951.1.S1_at--34--2471Chr03:11620689..11620713 (25 bp)
AACAACCAGCTGTTTCTCTCATCTC
LOC_Os03g20540
OsAffx.12951.1.S1_at--57--471Chr03:11620709..11620733 (25 bp)
ATCTCGAACCTACCATTGCATCTTT
LOC_Os03g20540
OsAffx.12951.1.S1_at--1067--9971Chr03:11620719..11620743 (25 bp)
TACCATTGCATCTTTGCATCCGCGT
LOC_Os03g20540
OsAffx.12951.1.S1_at--625--10271Chr03:11620731..11620755 (25 bp)
TTTGCATCCGCGTGGATCTCTCATC
LOC_Os03g20540
OsAffx.12951.1.S1_at--912--6411Chr03:11620745..11620769 (25 bp)
GATCTCTCATCCTCCAATGATGGGA
LOC_Os03g20540
OsAffx.12951.1.S1_at--191--9211Chr03:11620757..11620781 (25 bp)
TCCAATGATGGGAGCACTAGTGATC
LOC_Os03g20540
OsAffx.12951.1.S1_at--794--2411Chr03:11620794..11620818 (25 bp)
AAAAAGGCAGGTGCCTCGTCACCCA
LOC_Os03g20540
OsAffx.12951.1.S1_at--1081--1791Chr03:11620818..11620842 (25 bp)
ACCCTGGCTTGCTAGCTCATGTGGA
LOC_Os03g20540
OsAffx.12951.1.S1_at--350--10731Chr03:11620826..11620850 (25 bp)
TTGCTAGCTCATGTGGACGCCACTT
LOC_Os03g20540
OsAffx.12951.1.S1_at--15--1831Chr03:11620842..11620866 (25 bp)
ACGCCACTTGCGTGAGGTATGCTCA
LOC_Os03g20540
Target Sequence 
GGGCGTTAATCACAGAACAACCAGCTGTTTCTCTCATCTCGAACCTACCATTGCATCTTTGCATCCGCGTGGATCTCTCA
TCCTCCAATGATGGGAGCACTAGTGATCGGGAGATCGGGAAAAAAGGCAGGTGCCTCGTCACCCACCCTGGCTTGCTAGC
TCATGTGGACGCCACTTGCGTGAGGTATGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12951.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis