Browse Element(s) Details


Os.57428.1.S1_x_at

Description gb:AY224484.1
DB_XREF= gi:29367494
TID=Os.57428.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57428 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 29971 centromere protein-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) isolate 29971 centromere protein-like protein mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2058011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20530Os.38006.1.S1_at11/113+11608207..11614392expressed protein
LOC_Os03g20540OsAffx.12951.1.S1_at11/113+11620533..11620897hypothetical protein
LOC_Os03g20550Os.33131.1.A1_at11/113+11629657..11630977WRKY DNA binding domain containing protein, expressed
LOC_Os03g20560Os.23243.2.S1_at11/113+11631798..11632749lipoate-protein ligase, putative, expressed
LOC_Os03g20570Os.23243.1.A1_a_at11/113+11632832..11635444Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os03g20570OsAffx.28912.2.S1_at6/113+11632832..11635444Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os03g20580OsAffx.3283.1.S1_at11/113+11639233..11643090expressed protein
LOC_Os03g20580Os.57428.1.S1_x_at11/113+11639233..11643090expressed protein
LOC_Os03g20590OsAffx.25167.1.S1_at11/113+11645158..11646130hypothetical protein
LOC_Os03g20590OsAffx.6152.1.A1_at1/113+11645158..11646130hypothetical protein
LOC_Os03g20600Os.51506.1.S1_at11/113+11646358..11646954expressed protein
LOC_Os03g20610OsAffx.12952.1.S1_at11/113+11649114..11649392hypothetical protein
LOC_Os03g20620OsAffx.25168.2.S1_s_at11/113+11650429..11650889hypothetical protein
LOC_Os03g20620OsAffx.25168.2.S1_x_at11/113+11650429..11650889hypothetical protein
LOC_Os03g20620OsAffx.25168.1.S1_at2/113+11650429..11650889hypothetical protein
LOC_Os03g20630OsAffx.12953.1.S1_at11/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20630Os.10655.1.S1_at11/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20630Os.57481.1.S1_x_at8/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20640Os.24684.1.S1_at10/113+11656723..11658993expressed protein
LOC_Os03g20650NANA3+11662277..11663168bZIP transcription factor family protein, expressed
LOC_Os03g20660Os.47130.4.A1_x_at3/113+11665786..11666109retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57428.1.S1_x_at--592--5311Chr03:11641150..11641174 (25 bp)
GAAGGTCAAATGATTGGTCAGTCAA
LOC_Os03g20580
Os.57428.1.S1_x_at--1014--7111Chr03:11641134..11641158 (25 bp)
GTCAGTCAAACTGGCAGAATTCCAA
LOC_Os03g20580
Os.57428.1.S1_x_at--845--5191Chr03:11641118..11641142 (25 bp)
GAATTCCAATCAGAAGAACAGCGAT
LOC_Os03g20580
Os.57428.1.S1_x_at--916--1411Chr03:11641104..11641128 (25 bp)
AGAACAGCGATTACGGGAAAGAGTA
LOC_Os03g20580
Os.57428.1.S1_x_at--670--6091Chr03:11641084..11641108 (25 bp)
GAGTAAGAGAGCTTGCAGAGCAGAA
LOC_Os03g20580
Os.57428.1.S1_x_at--225--5051Chr03:11641070..11641094 (25 bp)
GCAGAGCAGAATGTATCTTTTCAAA
LOC_Os03g20580
Os.57428.1.S1_x_at--99--1211Chr03:11641041..11641065 (25 bp)
AGTTACTTTACTTGAATCGAACAGA
LOC_Os03g20580
Os.57428.1.S1_x_at--438--5131Chr03:11640981..11641005 (25 bp)
GCAAAACAAACAGCTCAATGACGAG
LOC_Os03g20580
Os.57428.1.S1_x_at--897--3731Chr03:11640968..11640992 (25 bp)
CTCAATGACGAGCTACAGAAAGTAA
LOC_Os03g20580
Os.57428.1.S1_x_at--448--5931Chr03:11640938..11640962 (25 bp)
GAGCATGATACTCTTTTGAAGTCAT
LOC_Os03g20580
Os.57428.1.S1_x_at--32--331Chr03:11640931..11640955 (25 bp)
ATACTCTTTTGAAGTCATCGGTTGA
LOC_Os03g20580
Target Sequence 
GAAGGTCAAATGATTGGTCAGTCAAACTGGCAGAATTCCAATCAGAAGAACAGCGATTACGGGAAAGAGTAAGAGAGCTT
GCAGAGCAGAATGTATCTTTTCAAAGAGAAGTTACTTTACTTGAATCGAACAGAATTGATGTTTCTAATAAGATAACAAG
TTTAGAACTGCAAAACAAACAGCTCAATGACGAGCTACAGAAAGTAAAGAAAGAGCATGATACTCTTTTGAAGTCATCGG
TTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57428.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis