Browse Element(s) Details


Os.23243.2.S1_at

Description gb:AK061075.1
DB_XREF= gi:32971093
TID=Os.23243.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23243 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-E01, full insert sequence.
FL= gb:AK111447.1 gb:AK061075.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2056011/11lipoate-protein ligase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20530Os.38006.1.S1_at11/113+11608207..11614392expressed protein
LOC_Os03g20540OsAffx.12951.1.S1_at11/113+11620533..11620897hypothetical protein
LOC_Os03g20550Os.33131.1.A1_at11/113+11629657..11630977WRKY DNA binding domain containing protein, expressed
LOC_Os03g20560Os.23243.2.S1_at11/113+11631798..11632749lipoate-protein ligase, putative, expressed
LOC_Os03g20570Os.23243.1.A1_a_at11/113+11632832..11635444Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os03g20570OsAffx.28912.2.S1_at6/113+11632832..11635444Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os03g20580OsAffx.3283.1.S1_at11/113+11639233..11643090expressed protein
LOC_Os03g20580Os.57428.1.S1_x_at11/113+11639233..11643090expressed protein
LOC_Os03g20590OsAffx.25167.1.S1_at11/113+11645158..11646130hypothetical protein
LOC_Os03g20590OsAffx.6152.1.A1_at1/113+11645158..11646130hypothetical protein
LOC_Os03g20600Os.51506.1.S1_at11/113+11646358..11646954expressed protein
LOC_Os03g20610OsAffx.12952.1.S1_at11/113+11649114..11649392hypothetical protein
LOC_Os03g20620OsAffx.25168.2.S1_s_at11/113+11650429..11650889hypothetical protein
LOC_Os03g20620OsAffx.25168.2.S1_x_at11/113+11650429..11650889hypothetical protein
LOC_Os03g20620OsAffx.25168.1.S1_at2/113+11650429..11650889hypothetical protein
LOC_Os03g20630OsAffx.12953.1.S1_at11/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20630Os.10655.1.S1_at11/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20630Os.57481.1.S1_x_at8/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20640Os.24684.1.S1_at10/113+11656723..11658993expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000273biological_processlipoic acid metabolism
GO:0006464biological_processprotein modification
GO:0005739cellular_componentmitochondrion
GO:0017118molecular_functionlipoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23243.2.S1_at--595--3451Chr03:11632209..11632233 (25 bp)
CAGGATCTCGTCAGGGTTTACTTGC
LOC_Os03g20560
Os.23243.2.S1_at--727--10471Chr03:11632192..11632216 (25 bp)
TTACTTGCCATGGTCTGGCCTTCAA
LOC_Os03g20560
Os.23243.2.S1_at--553--511Chr03:11632166..11632190 (25 bp)
ATCGATCCTGATTTGGGTTTCTTCG
LOC_Os03g20560
Os.23243.2.S1_at--81--7691Chr03:11632152..11632176 (25 bp)
GGGTTTCTTCGAGCACATTGTGCCC
LOC_Os03g20560
Os.23243.2.S1_at--161--1491Chr03:11632029..11632053 (25 bp)
AGCAAGAACATTCTGCTTCAGCGAT
LOC_Os03g20560
Os.23243.2.S1_at--936--991Chr03:11631994..11632018 (25 bp)
AGGATGAATCCGAGTGCGCCGACAT
LOC_Os03g20560
Os.23243.2.S1_at--687--4151Chr03:11631978..11632002 (25 bp)
CGCCGACATGGTTTGCTTAGCTGCA
LOC_Os03g20560
Os.23243.2.S1_at--654--5191Chr03:11631948..11631972 (25 bp)
GCAATCCTGATTGTTTTACTATGTA
LOC_Os03g20560
Os.23243.2.S1_at--786--1331Chr03:11631913..11631937 (25 bp)
AGAGTTCTTCAGAACGTCTTGCCGT
LOC_Os03g20560
Os.23243.2.S1_at--745--1891Chr03:11631900..11631924 (25 bp)
ACGTCTTGCCGTCAAGTCTGGAAAT
LOC_Os03g20560
Os.23243.2.S1_at--1052--4011Chr03:11631859..11631883 (25 bp)
CGTCTGGTTTTGTTCATTGCGAATG
LOC_Os03g20560
Target Sequence 
CAGGATCTCGTCAGGGTTTACTTGCCATGGTCTGGCCTTCAACATCGATCCTGATTTGGGTTTCTTCGAGCACATTGTGC
CCTGCGGNATCGCCGACAAGGAGGTCACCTCTCTGCGGCGAGAGGCGGCGGTGGAGCTCCCTCCCGACGAGGTGATCCAT
GATCAGCTCGTGCAGAGCTTAGCAAGAACATTCTGCTTCAGCGATGTGGAATTCAAGGATGAATCCGAGTGCGCCGACAT
GGTTTGCTTAGCTGCAGATAAGCAATCCTGATTGTTTTACTATGTATACTGAACTTAGAGTTCTTCAGAACGTCTTGCCG
TCAAGTCTGGAAATGACATTAGGAAATTTTCGTCTGGTTTTGTTCATTGCGAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23243.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis