Browse Element(s) Details


OsAffx.28912.2.S1_at

Description tigr:9631.m02043
TID=OsAffx.28912.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to RIKEN cDNA 4933426M09 gene
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g205706/11Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20530Os.38006.1.S1_at11/113+11608207..11614392expressed protein
LOC_Os03g20540OsAffx.12951.1.S1_at11/113+11620533..11620897hypothetical protein
LOC_Os03g20550Os.33131.1.A1_at11/113+11629657..11630977WRKY DNA binding domain containing protein, expressed
LOC_Os03g20560Os.23243.2.S1_at11/113+11631798..11632749lipoate-protein ligase, putative, expressed
LOC_Os03g20570Os.23243.1.A1_a_at11/113+11632832..11635444Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os03g20570OsAffx.28912.2.S1_at6/113+11632832..11635444Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os03g20580OsAffx.3283.1.S1_at11/113+11639233..11643090expressed protein
LOC_Os03g20580Os.57428.1.S1_x_at11/113+11639233..11643090expressed protein
LOC_Os03g20590OsAffx.25167.1.S1_at11/113+11645158..11646130hypothetical protein
LOC_Os03g20590OsAffx.6152.1.A1_at1/113+11645158..11646130hypothetical protein
LOC_Os03g20600Os.51506.1.S1_at11/113+11646358..11646954expressed protein
LOC_Os03g20610OsAffx.12952.1.S1_at11/113+11649114..11649392hypothetical protein
LOC_Os03g20620OsAffx.25168.2.S1_s_at11/113+11650429..11650889hypothetical protein
LOC_Os03g20620OsAffx.25168.2.S1_x_at11/113+11650429..11650889hypothetical protein
LOC_Os03g20620OsAffx.25168.1.S1_at2/113+11650429..11650889hypothetical protein
LOC_Os03g20630OsAffx.12953.1.S1_at11/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20630Os.10655.1.S1_at11/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20630Os.57481.1.S1_x_at8/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20640Os.24684.1.S1_at10/113+11656723..11658993expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008270molecular_functionzinc ion binding
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28912.2.S1_at--135--5851Chr03:11633817..11634314 (25 bp)
GACCTTTATGTCACATTTGTTTATG
LOC_Os03g20570
OsAffx.28912.2.S1_at--871--7091Chr03:11633826..11634323 (25 bp)
GTCACATTTGTTTATGGCACTCCAA
LOC_Os03g20570
OsAffx.28912.2.S1_at--231--851Chr03:11634312..11634336 (25 bp)
ATGGCACTCCAACTTCAAACTGTTT
LOC_Os03g20570
OsAffx.28912.2.S1_at--228--3291Chr03:11634327..11634351 (25 bp)
CAAACTGTTTGTCTCTTGCTAGGGA
LOC_Os03g20570
OsAffx.28912.2.S1_at--246--1971Chr03:11634330..11634354 (25 bp)
ACTGTTTGTCTCTTGCTAGGGAGGA
LOC_Os03g20570
OsAffx.28912.2.S1_at--218--8691Chr03:11634336..11634360 (25 bp)
TGTCTCTTGCTAGGGAGGAAATTCC
LOC_Os03g20570
OsAffx.28912.2.S1_at--875--1071NONE
AGGGAATCCAAATGCTGCCACATGC
NONE
OsAffx.28912.2.S1_at--1136--5251NONE
GAATCCAAATGCTGCCACATGCGTT
NONE
OsAffx.28912.2.S1_at--52--171NONE
ATTATTTGCAGCCAGATGAACGTGC
NONE
OsAffx.28912.2.S1_at--427--1691Chr03:11636682..11636702 (21 bp)
AGCCAGATGAACGTGCAGGAAAGGT
NONE
OsAffx.28912.2.S1_at--1011--4991Chr03:11636692..11636716 (25 bp)
GCAGGAAAGGTATTGGATCAACCCC
NONE
Target Sequence 
GACCTTTATGTCACATTTGTTTATGGCACTCCAACTTCAAACTGTTTGTCTCTTGCTAGGGAGGAAATTCCCGGGCCAAA
AGGTTACAAATGTACTGGTGGGATCATGGCGGAGGAGGCAGTGGCTCTTTTTAGAAATTTCTACGAGCAAGGGAATCCAA
ATGCTGCCACATGCGTTCATGTGATTGTTATTATTATTTGCAGCCAGATGAACGTGCAGGAAAGGTATTGGATCAACCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28912.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis