Browse Element(s) Details


Os.57481.1.S1_x_at

Description gb:D21291.1
DB_XREF= gi:429001
TID=Os.57481.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57481 (NCBI UniGene Cluster)
UG_TITLE=SS246 mRNA for photosystem II D1 protein, partial sequence
DEF=Oryza sativa SS246 mRNA for photosystem II D1 protein, partial sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g206308/1114 kDa zinc-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20550Os.33131.1.A1_at11/113+11629657..11630977WRKY DNA binding domain containing protein, expressed
LOC_Os03g20560Os.23243.2.S1_at11/113+11631798..11632749lipoate-protein ligase, putative, expressed
LOC_Os03g20570Os.23243.1.A1_a_at11/113+11632832..11635444Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os03g20570OsAffx.28912.2.S1_at6/113+11632832..11635444Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os03g20580OsAffx.3283.1.S1_at11/113+11639233..11643090expressed protein
LOC_Os03g20580Os.57428.1.S1_x_at11/113+11639233..11643090expressed protein
LOC_Os03g20590OsAffx.25167.1.S1_at11/113+11645158..11646130hypothetical protein
LOC_Os03g20590OsAffx.6152.1.A1_at1/113+11645158..11646130hypothetical protein
LOC_Os03g20600Os.51506.1.S1_at11/113+11646358..11646954expressed protein
LOC_Os03g20610OsAffx.12952.1.S1_at11/113+11649114..11649392hypothetical protein
LOC_Os03g20620OsAffx.25168.2.S1_s_at11/113+11650429..11650889hypothetical protein
LOC_Os03g20620OsAffx.25168.2.S1_x_at11/113+11650429..11650889hypothetical protein
LOC_Os03g20620OsAffx.25168.1.S1_at2/113+11650429..11650889hypothetical protein
LOC_Os03g20630OsAffx.12953.1.S1_at11/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20630Os.10655.1.S1_at11/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20630Os.57481.1.S1_x_at8/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20640Os.24684.1.S1_at10/113+11656723..11658993expressed protein
LOC_Os03g20650NANA3+11662277..11663168bZIP transcription factor family protein, expressed
LOC_Os03g20660Os.47130.4.A1_x_at3/113+11665786..11666109retrotransposon protein, putative, unclassified
LOC_Os03g20670Os.22300.1.S1_at11/113+11672438..11675979phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os03g20680OsAffx.12954.1.S1_at11/113+11678111..11679413Late embryogenesis abundant protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005080molecular_functionprotein kinase C binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57481.1.S1_x_at--961--5611NONE
GACAACCCCACCATATTTGACAAGA
NONE
Os.57481.1.S1_x_at--903--2911Chr03:11652748..11652772 (25 bp)
AAGGAAATACCTTCCACTGTGGTAT
LOC_Os03g20630
Os.57481.1.S1_x_at--130--3631Chr03:11652758..11652782 (25 bp)
CTTCCACTGTGGTATTTGACGATGA
LOC_Os03g20630
Os.57481.1.S1_x_at--682--5311Chr03:11655119..11655141 (23 bp)
GAAGGTTCTGGCTTTCAGAGACATA
LOC_Os03g20630
Os.57481.1.S1_x_at--342--1411Chr03:11655135..11655159 (25 bp)
AGACATAAATCCTCAAGCTCCGACC
LOC_Os03g20630
Os.57481.1.S1_x_at--767--1591Chr03:11655150..11655174 (25 bp)
AGCTCCGACCCACATTGTGATCATT
LOC_Os03g20630
Os.57481.1.S1_x_at--871--2911Chr03:11655184..11655208 (25 bp)
AAGGATGGATTAACTGGCCTATCAA
LOC_Os03g20630
Os.57481.1.S1_x_at--215--10031Chr03:11655757..11655781 (25 bp)
TAGAAATACTCGGTTACCTCCTCTA
LOC_Os03g20630
Os.57481.1.S1_x_at--1039--1731NONE
ACCTCCTCTATTGTTGCCAAAGTTG
NONE
Os.57481.1.S1_x_at--607--971NONE
AGGAGGCACTTTGAAGATGGCTACC
NONE
Os.57481.1.S1_x_at--434--6231Chr03:11655819..11655843 (25 bp)
GATGGCTACCGTATTGTCATCAATG
LOC_Os03g20630
Target Sequence 
GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGC
TTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAANGTGAAGGATGGATTAACTGGCCTATCAA
AGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTATTGTTGCCAAAGTTGTTGCAAAGAAGGAGGCACTTTG
AAGATGGCTACCGTATTGTCATCAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57481.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis