Browse Element(s) Details


Os.22300.1.S1_at

Description gb:AK101817.1
DB_XREF= gi:32987026
TID=Os.22300.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22300 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033067D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033067D09, full insert sequence.
FL= gb:AK101817.1 gb:AK058546.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2067011/11phagocytosis and cell motility protein ELMO1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20610OsAffx.12952.1.S1_at11/113+11649114..11649392hypothetical protein
LOC_Os03g20620OsAffx.25168.2.S1_s_at11/113+11650429..11650889hypothetical protein
LOC_Os03g20620OsAffx.25168.2.S1_x_at11/113+11650429..11650889hypothetical protein
LOC_Os03g20620OsAffx.25168.1.S1_at2/113+11650429..11650889hypothetical protein
LOC_Os03g20630OsAffx.12953.1.S1_at11/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20630Os.10655.1.S1_at11/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20630Os.57481.1.S1_x_at8/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20640Os.24684.1.S1_at10/113+11656723..11658993expressed protein
LOC_Os03g20650NANA3+11662277..11663168bZIP transcription factor family protein, expressed
LOC_Os03g20660Os.47130.4.A1_x_at3/113+11665786..11666109retrotransposon protein, putative, unclassified
LOC_Os03g20670Os.22300.1.S1_at11/113+11672438..11675979phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os03g20680OsAffx.12954.1.S1_at11/113+11678111..11679413Late embryogenesis abundant protein, expressed
LOC_Os03g20690Os.55478.1.S1_at1/113+11682467..11688504retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g20700Os.6595.1.S1_a_at11/113+11691143..11698420magnesium-chelatase subunit H family protein, expressed
LOC_Os03g20700Os.26986.1.A1_at1/113+11691143..11698420magnesium-chelatase subunit H family protein, expressed
LOC_Os03g20710OsAffx.12955.1.S1_at11/113+11699121..11700180Glycosyl hydrolase family 1 protein
LOC_Os03g20710Os.20617.2.S1_s_at11/113+11699121..11700180Glycosyl hydrolase family 1 protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22300.1.S1_at--528--5931Chr03:11675235..11675259 (25 bp)
GAGCAGACTGGGAGTACCCTTTTGC
LOC_Os03g20670
Os.22300.1.S1_at--794--1811Chr03:11675250..11675274 (25 bp)
ACCCTTTTGCGGTTGCTGGGATCAA
LOC_Os03g20670
Os.22300.1.S1_at--324--7971Chr03:11675302..11675416 (25 bp)
GGATCTACAGTCAAGTGTTCCATCT
LOC_Os03g20670
Os.22300.1.S1_at--1022--3451Chr03:11675510..11675534 (25 bp)
CAGTGGCTTGTGAAACGTGCTTCTT
LOC_Os03g20670
Os.22300.1.S1_at--510--1891Chr03:11675524..11675548 (25 bp)
ACGTGCTTCTTACATGGAGTTCAAT
LOC_Os03g20670
Os.22300.1.S1_at--394--5311Chr03:11675701..11675725 (25 bp)
GAAGGACCTGCCGTCTTACACAATG
LOC_Os03g20670
Os.22300.1.S1_at--564--6791Chr03:11675781..11675805 (25 bp)
GTTATCCGGATCTGCAACTGATTTA
LOC_Os03g20670
Os.22300.1.S1_at--139--10791Chr03:11675821..11675845 (25 bp)
TTGTTGTCTGACCATCTGAGTGCAT
LOC_Os03g20670
Os.22300.1.S1_at--914--4951Chr03:11675842..11675866 (25 bp)
GCATATTTATCTTTTCCTTGTTCAA
LOC_Os03g20670
Os.22300.1.S1_at--849--10531Chr03:11675875..11675899 (25 bp)
TTCAGGCCTGTGTACATAGTGTTCA
LOC_Os03g20670
Os.22300.1.S1_at--533--7051Chr03:11675906..11675930 (25 bp)
GTAACTTATGACTCGCCATTTCAAG
LOC_Os03g20670
Target Sequence 
GAGCAGACTGGGAGTACCCTTTTGCGGTTGCTGGGATCAACATTNTCATTTATGCTGATCCANAATGCTGGATCTACAGT
CAAGTGTTCCATCTTCAAAGTCAGGAGTTCGTTTTGTTGAACTGCTTGGACGAGATGAGAATGCATTTGATCACCTNCTA
CTGCNTAGCCTTTCGGCTTCTNGATGCTCAGTGGCTTGTGAAACGTGCTTCTTACATGGAGTTCAATGAGGTATTGAAAT
CTACAAGAACTCAGTTGGAGCGTGAACTAGTACTAGAGGATGTATTGGAGGTGAAGGACCTGCCGTCTTACACAATGCTG
GACAAATAATCCAAATAAGTAAGGGACTGTATGTGGCATTCAAGTGAAAAAAGTTATCCGGATCTGCAACTGATTTATGT
TGGCGGGGCCTTTTGTTGTCTGACCATCTGAGTGCATATTTATCTTTTCCTTGTTCAAGAGAAANATTCAGGCCTGTGTA
CATAGTGTTCATTTTCTGTAACTTATGACTCGCCATTTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis