Browse Element(s) Details


Os.6595.1.S1_a_at

Description gb:AK062262.1
DB_XREF= gi:32972280
TID=Os.6595.1
CNT=47
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.6595 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0047B07.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-047-H04, full insert sequence.
FL= gb:AK069545.1 gb:AK062262.1 gb:AK067323.1 gb:AK065420.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2070011/11magnesium-chelatase subunit H family protein, expressed
LOC_Os07g4631011/11CobN/magnesium chelatase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20670Os.22300.1.S1_at11/113+11672438..11675979phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os03g20680OsAffx.12954.1.S1_at11/113+11678111..11679413Late embryogenesis abundant protein, expressed
LOC_Os03g20690Os.55478.1.S1_at1/113+11682467..11688504retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g20700Os.6595.1.S1_a_at11/113+11691143..11698420magnesium-chelatase subunit H family protein, expressed
LOC_Os03g20700Os.26986.1.A1_at1/113+11691143..11698420magnesium-chelatase subunit H family protein, expressed
LOC_Os03g20710OsAffx.12955.1.S1_at11/113+11699121..11700180Glycosyl hydrolase family 1 protein
LOC_Os03g20710Os.20617.2.S1_s_at11/113+11699121..11700180Glycosyl hydrolase family 1 protein
LOC_Os03g20720NANA3+11704104..11708699GTPase activating protein, putative, expressed
LOC_Os03g20730OsAffx.25169.1.S1_s_at11/113+11709748..11710398DnaJ domain containing protein, expressed
LOC_Os03g20730Os.26059.1.S1_x_at8/113+11709748..11710398DnaJ domain containing protein, expressed
LOC_Os03g20730Os.26059.1.S1_at2/113+11709748..11710398DnaJ domain containing protein, expressed
LOC_Os03g20740OsAffx.3285.1.S1_at11/113+11717989..11718691expressed protein
LOC_Os03g20750Os.5126.1.S1_at11/113+11721422..11726788mitochondrial import receptor subunit TOM40 homolog, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0009706cellular_componentchloroplast inner membrane
GO:0016851molecular_functionmagnesium chelatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6595.1.S1_a_at--518--5712Chr03:11697112..11697136 (25 bp)
GACTCAGACCCGACAAAGCTGGTGC
LOC_Os03g20700
Os.6595.1.S1_a_at--356--3292Chr03:11697125..11697149 (25 bp)
CAAAGCTGGTGCAAGGACTGCGCAA
LOC_Os03g20700
Os.6595.1.S1_a_at--66--1752Chr03:11697162..11697186 (25 bp)
ACCTTCCTCATACATAGCAGATACA
LOC_Os03g20700
Os.6595.1.S1_a_at--967--272Chr03:11697175..11697199 (25 bp)
ATAGCAGATACAACCACAGCAAATG
LOC_Os03g20700
Os.6595.1.S1_a_at--895--652Chr03:11697197..11697221 (25 bp)
ATGCACAGGTGAGGACATTGTCAGA
LOC_Os03g20700
Os.6595.1.S1_a_at--106--52Chr03:11697213..11697237 (25 bp)
ATTGTCAGAGACAGTGCGCCTTGAT
LOC_Os03g20700
Os.6595.1.S1_a_at--902--5652Chr03:11697222..11697246 (25 bp)
GACAGTGCGCCTTGATGCAAGGACA
LOC_Os03g20700
Os.6595.1.S1_a_at--124--7892Chr03:11697242..11697266 (25 bp)
GGACAAAGCTACTGAACCCTAAGTG
LOC_Os03g20700
Os.6595.1.S1_a_at--806--3232Chr03:11697366..11697390 (25 bp)
CAACTGGGTTTATGAGGAGGCAAAT
LOC_Os03g20700
Os.6595.1.S1_a_at--1161--6192Chr03:11697382..11697406 (25 bp)
GAGGCAAATGCCACATTTATTGAAG
LOC_Os03g20700
Os.6595.1.S1_a_at--281--2612Chr03:11697439..11697463 (25 bp)
AACCCCAATTCATTCAGGAAGCTAG
LOC_Os03g20700
Target Sequence 
GACTCAGACCCGACAAAGCTGGTGCAAGGACTGCGCAAGGATGGGCGGGCACCTTCCTCATACATAGCAGATACAACCAC
AGCAAATGCACAGGTGAGGACATTGTCAGAGACAGTGCGCCTTGATGCAAGGACAAAGCTACTGAACCCTAAGTGGTACG
AGGGGATGATGAAAAGTGGCTACGAGGGAGTTAGAGAGATTGAGAAGCGGCTGACAAATACTGTTGGATGGAGTGCAACA
TCTGGACAGGTTGACAACTGGGTTTATGAGGAGGCAAATGCCACATTTATTGAAGATGAGGCTATGAGGAAGAGGCTCAT
GGACACCAACCCCAATTCATTCAGGAAGCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6595.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis