Browse Element(s) Details


Os.26059.1.S1_at

Description gb:AK107871.1
DB_XREF= gi:32993080
TID=Os.26059.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26059 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-C07, full insert sequence.
FL= gb:AK107871.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g207302/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20690Os.55478.1.S1_at1/113+11682467..11688504retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g20700Os.6595.1.S1_a_at11/113+11691143..11698420magnesium-chelatase subunit H family protein, expressed
LOC_Os03g20700Os.26986.1.A1_at1/113+11691143..11698420magnesium-chelatase subunit H family protein, expressed
LOC_Os03g20710OsAffx.12955.1.S1_at11/113+11699121..11700180Glycosyl hydrolase family 1 protein
LOC_Os03g20710Os.20617.2.S1_s_at11/113+11699121..11700180Glycosyl hydrolase family 1 protein
LOC_Os03g20720NANA3+11704104..11708699GTPase activating protein, putative, expressed
LOC_Os03g20730OsAffx.25169.1.S1_s_at11/113+11709748..11710398DnaJ domain containing protein, expressed
LOC_Os03g20730Os.26059.1.S1_x_at8/113+11709748..11710398DnaJ domain containing protein, expressed
LOC_Os03g20730Os.26059.1.S1_at2/113+11709748..11710398DnaJ domain containing protein, expressed
LOC_Os03g20740OsAffx.3285.1.S1_at11/113+11717989..11718691expressed protein
LOC_Os03g20750Os.5126.1.S1_at11/113+11721422..11726788mitochondrial import receptor subunit TOM40 homolog, putative, expressed
LOC_Os03g20760Os.55458.1.S1_at10/113+11730705..11732232Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g20770OsAffx.12956.1.S1_at11/113+11733805..11735597hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26059.1.S1_at--715--1671Chr03:11709751..11709775 (25 bp)
AGCCGAGAATCGCAGAATTCGCAGT
LOC_Os03g20730
Os.26059.1.S1_at--160--4511Chr03:11709750..11709774 (25 bp)
GCCGAGAATCGCAGAATTCGCAGTG
LOC_Os03g20730
Os.26059.1.S1_at--854--4071Chr03:11709748..11709772 (25 bp)
CGAGAATCGCAGAATTCGCAGTGGC
NONE
Os.26059.1.S1_at--1032--5951Chr03:11709747..11709771 (25 bp)
GAGAATCGCAGAATTCGCAGTGGCT
NONE
Os.26059.1.S1_at--868--1471Chr03:11709746..11709770 (25 bp)
AGAATCGCAGAATTCGCAGTGGCTT
NONE
Os.26059.1.S1_at--1142--5251Chr03:11709745..11709769 (25 bp)
GAATCGCAGAATTCGCAGTGGCTTT
NONE
Os.26059.1.S1_at--946--3031Chr03:11709744..11709768 (25 bp)
AATCGCAGAATTCGCAGTGGCTTTT
NONE
Os.26059.1.S1_at--976--9331Chr03:11709742..11709766 (25 bp)
TCGCAGAATTCGCAGTGGCTTTTTT
NONE
Os.26059.1.S1_at--1008--1471Chr03:11709742..11709762 (21 bp)
AGAATTCGCAGTGGCTTTTTTTGAA
NONE
Os.26059.1.S1_at--821--9351NONE
TCGCAGTGGCTTTTTTTGAATTTTG
NONE
Os.26059.1.S1_at--197--7491Chr03:11709604..11709628 (25 bp)
GTGGTACATGGTAGTAGTATAGAAG
NONE
Target Sequence 
AGCCGAGAATCGCAGAATTCGCAGTGGCTTTTTTTGAATTTTGAATTTGTGTTGAGTTTTCTCTTTTTCTTTCACTTTTT
TTTTCCTCTTCTGTAGCCTTCCTTGGGATGTGTATATACCATACGGAGTATTAGGATATGATCTATAGGTGGTACATGGT
AGTAGTATAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26059.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis