Browse Element(s) Details


Os.26986.1.A1_at

Description gb:CB631800
DB_XREF= gi:29626789
DB_XREF=OSIIEb09J15.r
CLONE=OSIIEb09J15
TID=Os.26986.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.26986 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_568166.1 (A.thaliana) 2-cys peroxiredoxin-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g339707/112-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os02g307141/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g207001/11magnesium-chelatase subunit H family protein, expressed
LOC_Os06g480301/11Peroxidase 16 precursor, putative, expressed
LOC_Os01g417201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33910OsAffx.31811.4.S1_at10/114+20348560..20351603hypothetical protein
LOC_Os04g33910Os.31535.1.A1_at1/114+20348560..20351603hypothetical protein
LOC_Os04g33910OsAffx.11549.1.S1_at1/114+20348560..20351603hypothetical protein
LOC_Os04g33910OsAffx.31811.2.S1_x_at1/114+20348560..20351603hypothetical protein
LOC_Os04g33920OsAffx.26317.1.S2_at9/114+20356070..20357087protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os04g33930NANA4+20359790..20361089protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os04g33940OsAffx.14122.1.S1_at11/114+20361536..20362538expressed protein
LOC_Os04g33950Os.52509.1.S1_at11/114+20362600..20367754Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os04g33960OsAffx.3987.1.S1_at10/114+20369845..20371139hypothetical protein
LOC_Os04g33970OsAffx.14123.1.S1_at9/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os04g33970Os.26986.1.A1_at7/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os04g33970Os.46481.2.S1_x_at1/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os04g33980Os.56332.1.S1_at11/114+20380462..20383839transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g33990Os.49701.1.S1_at10/114+20391996..20393143Harpin-induced protein 1 containing protein, expressed
LOC_Os04g34000OsAffx.26318.1.S1_at11/114+20399726..20405837digalactosyldiacylglycerol synthase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0009706cellular_componentchloroplast inner membrane
GO:0004601molecular_functionperoxidase activity
GO:0016209molecular_functionantioxidant activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016851molecular_functionmagnesium chelatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26986.1.A1_at--395--35172Chr12:27325548..27325569 (22 bp)
CATGAGAGCGAACGTGGAGGCTTCT
NONE
Os.26986.1.A1_at--732--10171Chr04:20375577..20375601 (25 bp)
TATACAATATATGTCTTTCTTCTGG
LOC_Os04g33970
Os.26986.1.A1_at--319--7151Chr04:20375589..20375613 (25 bp)
GTCTTTCTTCTGGATATTTACTTGT
LOC_Os04g33970
Os.26986.1.A1_at--350--9571Chr04:20375594..20375618 (25 bp)
TCTTCTGGATATTTACTTGTTTGTA
LOC_Os04g33970
Os.26986.1.A1_at--338--2051Chr04:20375608..20375632 (25 bp)
ACTTGTTTGTATTCAAAGTCTTTTG
LOC_Os04g33970
Os.26986.1.A1_at--469--7151Chr04:20375625..20375649 (25 bp)
GTCTTTTGTCATGTATTCCTTGTTC
LOC_Os04g33970
Os.26986.1.A1_at--394--10811Chr04:20375630..20375654 (25 bp)
TTGTCATGTATTCCTTGTTCTTAAT
LOC_Os04g33970
Os.26986.1.A1_at--898--5671Chr04:20376128..20376152 (25 bp)
GACATTTTATTTACATTCATGGTCA
NONE
Os.26986.1.A1_at--15--6631Chr04:20376171..20376195 (25 bp)
GTTGGGTCACACATTGCTCTTATGA
NONE
Os.26986.1.A1_at--338--7671Chr04:20376174..20376198 (25 bp)
GGGTCACACATTGCTCTTATGATCG
NONE
Os.26986.1.A1_at--894--7091Chr04:20376176..20376200 (25 bp)
GTCACACATTGCTCTTATGATCGAA
NONE
Target Sequence 
CATGAGAGCGAACGTGGAGGCTTCTTTTTCTATTCCTTTAATAATATAATAGATTTCAAAGTCTTTTGGTGTACTAATCC
CNGATCAGGTATACTTCAGTTATGNCTGCCTGTTGGCTATATATACAATATATGTCTTTCTTCTGGATATTTACTTGTTT
GTATTCAAAGTCTTTTGTCATGTATTCCTTGTTCTTAATNCTCATAAGAGCTCATACTTTNTGCTGTCAGGGGATTGCTC
TGAGAGGATTATTCATCATTGNCAAGGAGGGTGTGATTCAGCATTNTNCCATTAACAACCTTGNTATTGGCCGTAGNGTG
GATGAGACGCTTAGGACCCTTCAGGCCCTACAGTANGTCCAAGAAAACCCGGATGAGGTTTGCCCAGCTGGANGGAAACC
TGGGGAGAAGTCAATGAAGCCTGACCCCAAGGACAGCAAGGAGTACTTTGCTTNTATTTAGACATTTTATTTACATTCAT
GGTCAANTTTTANNATAGCCTTNGTTGGGTCACACATTGCTCTTATGATCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26986.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis