Browse Element(s) Details


OsAffx.26318.1.S1_at

Description tigr:9632.m03263
TID=OsAffx.26318.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3400011/11digalactosyldiacylglycerol synthase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33970OsAffx.14123.1.S1_at9/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os04g33970Os.26986.1.A1_at7/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os04g33970Os.46481.2.S1_x_at1/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os04g33980Os.56332.1.S1_at11/114+20380462..20383839transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g33990Os.49701.1.S1_at10/114+20391996..20393143Harpin-induced protein 1 containing protein, expressed
LOC_Os04g34000OsAffx.26318.1.S1_at11/114+20399726..20405837digalactosyldiacylglycerol synthase 1, putative, expressed
LOC_Os04g34010Os.7467.1.S1_at11/114+20405435..20408753aluminum-activated malate transporter, putative, expressed
LOC_Os04g34020Os.47130.4.A1_x_at3/114+20419153..20419476retrotransposon protein, putative, unclassified
LOC_Os04g34030OsAffx.28340.2.S1_at11/114+20422756..20424111U-box domain containing protein
LOC_Os04g34030OsAffx.28340.1.S1_x_at1/114+20422756..20424111U-box domain containing protein
LOC_Os04g34030OsAffx.3096.1.S1_s_at1/114+20422756..20424111U-box domain containing protein
LOC_Os04g34040OsAffx.3989.1.S1_at9/114+20430232..20433965hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0009247biological_processglycolipid biosynthesis
GO:0016036biological_processcellular response to phosphate starvation
GO:0019375biological_processgalactolipid biosynthesis
GO:0042550biological_processphotosystem I stabilization
GO:0005739cellular_componentmitochondrion
GO:0009707cellular_componentchloroplast outer membrane
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035250molecular_functionUDP-galactosyltransferase activity
GO:0046480molecular_functiongalactolipid galactosyltransferase activity
GO:0046481molecular_functionUDP-galactose:MGDG galactosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26318.1.S1_at--1072--3431Chr04:20402831..20402851 (21 bp)
CAGATTCTTCGCTTCATGGGTATAA
LOC_Os04g34000
OsAffx.26318.1.S1_at--139--6291Chr04:20402980..20403004 (25 bp)
GATGTTCTATGCACAGCGACAGCTG
LOC_Os04g34000
OsAffx.26318.1.S1_at--214--1651Chr04:20402994..20403018 (25 bp)
AGCGACAGCTGAGGCTCTTGCAATG
LOC_Os04g34000
OsAffx.26318.1.S1_at--52--491Chr04:20403031..20403055 (25 bp)
ATCTGTGCAGATCATCCATCAAACG
LOC_Os04g34000
OsAffx.26318.1.S1_at--457--711Chr04:20403056..20403080 (25 bp)
AATTTTTCAAGTCATTCCCCAACTG
LOC_Os04g34000
OsAffx.26318.1.S1_at--156--91Chr04:20403069..20403093 (25 bp)
ATTCCCCAACTGCTTAACATACAAA
LOC_Os04g34000
OsAffx.26318.1.S1_at--654--2051Chr04:20403094..20403118 (25 bp)
ACTTCCGAAGAATTTGTTGCCCGAG
LOC_Os04g34000
OsAffx.26318.1.S1_at--1072--6211Chr04:20403124..20403148 (25 bp)
GAGGCCATGGCTAGTGAACCTTCAC
LOC_Os04g34000
OsAffx.26318.1.S1_at--379--10271Chr04:20403150..20403174 (25 bp)
TTTGACCCCTGAGCAAAGGTACAGT
LOC_Os04g34000
OsAffx.26318.1.S1_at--972--6852Chr04:20403173..20403197 (25 bp)
GTTTGTCATGGGAGGCAGCAACTGA
LOC_Os04g34000
OsAffx.26318.1.S1_at--1157--3491Chr04:20403204..20403228 (25 bp)
CATGGAGTACTCAGAGCTTGACAAA
LOC_Os04g34000
Target Sequence 
CAGATTCTTCGCTTCATGGGTATAAGGTTTTCATTAATCCAAGTGTCAGTGATGTTCTATGCACAGCGACAGCTGAGGCT
CTTGCAATGGGGAAATTTGTTATCTGTGCAGATCATCCATCAAACGAATTTTTCAAGTCATTCCCCAACTGCTTAACATA
CAAAACTTCCGAAGAATTTGTTGCCCGAGTGAAAGAGGCCATGGCTAGTGAACCTTCACCTTTGACCCCTGAGCAAAGGT
ACAGTTTGTCATGGGAGGCAGCAACTGAAAGATTCATGGAGTACTCAGAGCTTGACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis