Browse Element(s) Details


Os.7467.1.S1_at

Description gb:AK063428.1
DB_XREF= gi:32973446
TID=Os.7467.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7467 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-D04, full insert sequence.
FL= gb:AK063428.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3401011/11aluminum-activated malate transporter, putative, expressed
LOC_Os01g493801/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33980Os.56332.1.S1_at11/114+20380462..20383839transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g33990Os.49701.1.S1_at10/114+20391996..20393143Harpin-induced protein 1 containing protein, expressed
LOC_Os04g34000OsAffx.26318.1.S1_at11/114+20399726..20405837digalactosyldiacylglycerol synthase 1, putative, expressed
LOC_Os04g34010Os.7467.1.S1_at11/114+20405435..20408753aluminum-activated malate transporter, putative, expressed
LOC_Os04g34020Os.47130.4.A1_x_at3/114+20419153..20419476retrotransposon protein, putative, unclassified
LOC_Os04g34030OsAffx.28340.2.S1_at11/114+20422756..20424111U-box domain containing protein
LOC_Os04g34030OsAffx.28340.1.S1_x_at1/114+20422756..20424111U-box domain containing protein
LOC_Os04g34030OsAffx.3096.1.S1_s_at1/114+20422756..20424111U-box domain containing protein
LOC_Os04g34040OsAffx.3989.1.S1_at9/114+20430232..20433965hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7467.1.S1_at--1057--911Chr04:20406090..20406114 (25 bp)
AGGCTATGGCTTCCTATGTCATCAC
LOC_Os04g34010
Os.7467.1.S1_at--1124--6891Chr04:20405957..20405981 (25 bp)
GTATCCTGAAGCCAATCCTGAGCTG
LOC_Os04g34010
Os.7467.1.S1_at--1133--3011Chr04:20405944..20405968 (25 bp)
AATCCTGAGCTGTCCTTCAAAGTAC
LOC_Os04g34010
Os.7467.1.S1_at--170--8911Chr04:20405906..20405930 (25 bp)
TGAGATGAGCTCACACTCTGCTCAG
LOC_Os04g34010
Os.7467.1.S1_at--603--8251Chr04:20405864..20405888 (25 bp)
GGCAGCACTTCGAACAATGACCGTA
LOC_Os04g34010
Os.7467.1.S1_at--216--4972Chr04:20405734..20405758 (25 bp)
GCATCACTTCTTTCAGACTTGGTTA
LOC_Os04g34010
Os.7467.1.S1_at--779--1451Chr04:20405690..20405714 (25 bp)
AGAATCTGTCGATAACCTGGCACGA
LOC_Os04g34010
Os.7467.1.S1_at--651--10691Chr04:20405664..20405688 (25 bp)
TTGCCTGCTTCAAAGTCCCTGAAAA
LOC_Os04g34010
Os.7467.1.S1_at--906--9931Chr04:20405593..20405617 (25 bp)
TACGTCGAGAGCATCAACACCAAAT
LOC_Os04g34010
Os.7467.1.S1_at--271--8151Chr04:20405567..20405591 (25 bp)
GGACAAACTAGTACGGCCTGCAATT
LOC_Os04g34010
Os.7467.1.S1_at--750--9691Chr04:20405469..20405493 (25 bp)
TAAAACGTTGCAGCCTTCCGTACAA
LOC_Os04g34010
Target Sequence 
AGGCTATGGCTTCCTATGTCATCACACTCACAAAATCTCAGTATCCTGAAGCCAATCCTGAGCTGTCCTTCAAAGTACGA
ACAGCATGCAGTGAGATGAGCTCACACTCTGCTCAGGCACTCAGAGAGCTCTCGGCAGCACTTCGAACAATGACCGTACC
ATCTACAACCTCCATGTCTGCAGCCATCAAAGCTGCCAAAACACTCAGGAGCGAGCTATCAGAGGATAAAGCTCTGCTGC
AAGTGATGCATGTGGCAGTTACTGCATCACTTCTTTCAGACTTGGTTACACAAGTAAAGAAAATTGCAGAATCTGTCGAT
AACCTGGCACGACTTGCCTGCTTCAAAGTCCCTGAAAAATCTCAGAAAGAAGTGGCTATCAACATCATGAGTTGACAAAC
TGACTACGTCGAGAGCATCAACACCAAATGGGACAAACTAGTACGGCCTGCAATTTTATTGTGTAGGAGTATTAGCAAGT
GACTAATTCTTCGATGCTAGAAGTAATTATGATGCTGAACTGTAAAAATAAAACGTTGCAGCCTTCCGTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7467.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis