Browse Element(s) Details


OsAffx.3989.1.S1_at

Description tigr:9632.m03267
TID=OsAffx.3989.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g340409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34000OsAffx.26318.1.S1_at11/114+20399726..20405837digalactosyldiacylglycerol synthase 1, putative, expressed
LOC_Os04g34010Os.7467.1.S1_at11/114+20405435..20408753aluminum-activated malate transporter, putative, expressed
LOC_Os04g34020Os.47130.4.A1_x_at3/114+20419153..20419476retrotransposon protein, putative, unclassified
LOC_Os04g34030OsAffx.28340.2.S1_at11/114+20422756..20424111U-box domain containing protein
LOC_Os04g34030OsAffx.28340.1.S1_x_at1/114+20422756..20424111U-box domain containing protein
LOC_Os04g34030OsAffx.3096.1.S1_s_at1/114+20422756..20424111U-box domain containing protein
LOC_Os04g34040OsAffx.3989.1.S1_at9/114+20430232..20433965hypothetical protein
LOC_Os04g34050OsAffx.3990.1.S1_at11/114+20437273..20438530VQ motif family protein, expressed
LOC_Os04g34060OsAffx.3991.1.S1_at11/114+20440192..20440698hypothetical protein
LOC_Os04g34070OsAffx.19542.3.S1_x_at7/114+20442643..20446865retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34080Os.6188.1.S1_at11/114+20453054..20457991WD-40 repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3989.1.S1_at--1139--1691NONE
AGCCAAGGAGGTCCCGAGTTCAAAG
NONE
OsAffx.3989.1.S1_at--527--2571Chr04:20431981..20432005 (25 bp)
AACTGGCTAAACACGCAAAGGACAA
LOC_Os04g34040
OsAffx.3989.1.S1_at--106--4871NONE
GCTAGCTTTCAAAATCGTGCTCAAA
NONE
OsAffx.3989.1.S1_at--1055--491Chr04:20430552..20430576 (25 bp)
ATCGTGCTCAAACATATCAAGGCTA
LOC_Os04g34040
OsAffx.3989.1.S1_at--1079--3212Chr07:13080073..13080245 (25 bp)
CAAGCTATACACCTATACGGCTATA
NONE
OsAffx.3989.1.S1_at--984--311Chr04:20430497..20430521 (25 bp)
ATACGGCTATACCTGGTGGACCTGG
LOC_Os04g34040
OsAffx.3989.1.S1_at--275--7511Chr04:20430482..20430506 (25 bp)
GTGGACCTGGCAACGGTGGCAAACT
LOC_Os04g34040
OsAffx.3989.1.S1_at--760--2531Chr04:20430461..20430485 (25 bp)
AACTCAATATTGCTCCGTTGTTGCC
LOC_Os04g34040
OsAffx.3989.1.S1_at--911--10773Chr01:28282378..28282401 (24 bp)
TTGTTGCCGTCGGATGGATCCAGAT
NONE
OsAffx.3989.1.S1_at--227--6251Chr04:20430422..20430446 (25 bp)
GATGGATGTGGCGTTTTCTTCCAAC
LOC_Os04g34040
OsAffx.3989.1.S1_at--755--10371Chr04:20430409..20430433 (25 bp)
TTTTCTTCCAACAGGTGCCATCGTG
LOC_Os04g34040
Target Sequence 
AGCCAAGGAGGTCCCGAGTTCAAAGAAAAGAAGAGTGGAAACTGGCTAAACACGCAAAGGACAAGCTAAAACTTAGTACT
AGGAAGCTAGCTTTCAAAATCGTGCTCAAACATATCAAGGCTAATCATGCTCAAGCATTCAAGCTATACACCTATACGGC
TATACCTGGTGGACCTGGCAACGGTGGCAAACTCAATATTGCTCCGTTGTTGCCGTCGGATGGATCCAGATGGATGTGGC
GTTTTCTTCCAACAGGTGCCATCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3989.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis