Browse Element(s) Details


Os.6188.1.S1_at

Description gb:AK067483.1
DB_XREF= gi:32977501
TID=Os.6188.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6188 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013108P06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108P06, full insert sequence.
FL= gb:AK067483.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3408011/11WD-40 repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34040OsAffx.3989.1.S1_at9/114+20430232..20433965hypothetical protein
LOC_Os04g34050OsAffx.3990.1.S1_at11/114+20437273..20438530VQ motif family protein, expressed
LOC_Os04g34060OsAffx.3991.1.S1_at11/114+20440192..20440698hypothetical protein
LOC_Os04g34070OsAffx.19542.3.S1_x_at7/114+20442643..20446865retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34080Os.6188.1.S1_at11/114+20453054..20457991WD-40 repeat family protein, putative, expressed
LOC_Os04g34090OsAffx.14124.1.S1_at11/114+20464488..20465406hypothetical protein
LOC_Os04g34100Os.7358.1.S1_at11/114+20466314..20469793expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6188.1.S1_at--818--871Chr04:20453610..20453634 (25 bp)
ATGGCCCGGGCTGCATCAAGAAAGA
LOC_Os04g34080
Os.6188.1.S1_at--328--8991Chr04:20453578..20453602 (25 bp)
TGAAGAATTCTTCCAGCCTGACTGA
LOC_Os04g34080
Os.6188.1.S1_at--1029--2471Chr04:20453478..20453502 (25 bp)
CATGAAGGGTACTCCGACATGGCCG
LOC_Os04g34080
Os.6188.1.S1_at--186--8051Chr04:20453451..20453475 (25 bp)
GGAGAAGCTTCCACCTGCAAAAGCC
LOC_Os04g34080
Os.6188.1.S1_at--831--451Chr04:20453390..20453414 (25 bp)
ATCTCGCCTGCTTGGAACACGGTGA
LOC_Os04g34080
Os.6188.1.S1_at--64--3351Chr04:20453373..20453397 (25 bp)
CACGGTGATCGTGACTGCAAGTCGA
LOC_Os04g34080
Os.6188.1.S1_at--722--5991Chr04:20453350..20453374 (25 bp)
GAGACGGTGTGATCAGGTCTTTCCA
LOC_Os04g34080
Os.6188.1.S1_at--466--1031Chr04:20453336..20453360 (25 bp)
AGGTCTTTCCACAACTACGGCTTGC
LOC_Os04g34080
Os.6188.1.S1_at--486--9931Chr04:20453321..20453345 (25 bp)
TACGGCTTGCCTGTGAGATTGTGAT
LOC_Os04g34080
Os.6188.1.S1_at--16--9471Chr04:20453093..20453117 (25 bp)
TCTGAACTTGTGGTGCTTGTCGAAA
LOC_Os04g34080
Os.6188.1.S1_at--872--571Chr04:20453057..20453081 (25 bp)
ATCCAGAAGCGTTTTTTCCCTCTTG
LOC_Os04g34080
Target Sequence 
ATGGCCCGGGCTGCATCAAGAAAGACAGCAGGTGAAGAATTCTTCCAGCCTGACTGAAGAATCCGTCAGTTCACCNATTT
TGCACCGCCACGGGGAACGCCGTTCCCCCGCAGCGCGNTGTTTCGCTGACGGCATGAAGGGTACTCCGACATGGCCGGAG
GAGAAGCTTCCACCTGCAAAAGCCGCTGATGCCCCACGACTGTCTGACTGTCTCTCCACGATCTCGCCTGCTTGGAACAC
GGTGATCGTGACTGCAAGTCGAGACGGTGTGATCAGGTCTTTCCACAACTACGGCTTGCCTGTGAGATTGTGATGATCTG
CAAATGCAAGGCAATCAGCTTTGGTATAGTCTGACTNTGATTTGCGTGCGTGCGTGAGTGTGTTCGCTGAAGAAGAAGCT
ACAGAAAACTGTAGCTTTGGTGATAGCCTTTACTAACNCAGTAAAGTTTTTTTGTTGGTAGTAGATGGTAGGAAGGNGNG
GANAGGATCTTATTTTTTTTGTACTGCGAATTCAGAATCTGAACTTGTGGTGCTTGTCGAAATGAGGTGGTCAATCCAGA
AGCGTTTTTTCCCTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6188.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis