Browse Element(s) Details


OsAffx.14124.1.S1_at

Description tigr:9632.m03272
TID=OsAffx.14124.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3409011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34060OsAffx.3991.1.S1_at11/114+20440192..20440698hypothetical protein
LOC_Os04g34070OsAffx.19542.3.S1_x_at7/114+20442643..20446865retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34080Os.6188.1.S1_at11/114+20453054..20457991WD-40 repeat family protein, putative, expressed
LOC_Os04g34090OsAffx.14124.1.S1_at11/114+20464488..20465406hypothetical protein
LOC_Os04g34100Os.7358.1.S1_at11/114+20466314..20469793expressed protein
LOC_Os04g34110NANA4+20486664..20490976retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14124.1.S1_at--81--7171Chr04:20464622..20464646 (25 bp)
GTCTCATCCTCCCATGAAGAAGCAA
LOC_Os04g34090
OsAffx.14124.1.S1_at--579--9031Chr04:20464649..20464673 (25 bp)
TGCAGCTGCACGATGCAACGCCCTT
LOC_Os04g34090
OsAffx.14124.1.S1_at--1152--9011Chr04:20464662..20464686 (25 bp)
TGCAACGCCCTTTTTGTTGACAGAT
LOC_Os04g34090
OsAffx.14124.1.S1_at--70--371Chr04:20464798..20464822 (25 bp)
ATAATGATGTATCCCCTGGTTGCGT
LOC_Os04g34090
OsAffx.14124.1.S1_at--509--4191Chr04:20464811..20464835 (25 bp)
CCCTGGTTGCGTCGTTGGAATACAT
LOC_Os04g34090
OsAffx.14124.1.S1_at--743--1971Chr04:20464855..20464879 (25 bp)
ACTGCATCATGCGTGGTGTTCTTCC
LOC_Os04g34090
OsAffx.14124.1.S1_at--153--7431Chr04:20464870..20464894 (25 bp)
GTGTTCTTCCACTTGATCGTGTCAT
LOC_Os04g34090
OsAffx.14124.1.S1_at--1001--6391Chr04:20464884..20464908 (25 bp)
GATCGTGTCATTTTACGGCACAGAA
LOC_Os04g34090
OsAffx.14124.1.S1_at--998--5551Chr04:20464906..20465020 (25 bp)
GAAATGACGGAAAACCTGTGTTCTT
LOC_Os04g34090
OsAffx.14124.1.S1_at--675--1771Chr04:20465013..20465033 (21 bp)
ACCTGTGTTCTTGCGATGGGATGAC
LOC_Os04g34090
OsAffx.14124.1.S1_at--565--1811Chr04:20465221..20465245 (25 bp)
ACCCTGTGGCTGTGGTGCGTCTACC
LOC_Os04g34090
Target Sequence 
GTCTCATCCTCCCATGAAGAAGCAAGCTGCAGCTGCACGATGCAACGCCCTTTTTGTTGACAGATTTGAGAAGATAATGA
TGTATCCCCTGGTTGCGTCGTTGGAATACATTTTTTGTTTCGGGGGCTGGACTGCATCATGCGTGGTGTTCTTCCACTTG
ATCGTGTCATTTTACGGCACAGAAATGACGGAAAACCTGTGTTCTTGCGATGGGATGACGGCCGAGGAGGCCGCCGCCAT
GCGCGGCGTCGAGGCGTGCATGCTGCTGAGCTGCGCGGCGCAGATGGCCGCGGCGGCGGCGGCCATGGCACTGACGACGG
CGACGGCGACGTGGGGGCGGCGGTCACGGCGCGCGCGCGCCGTCCGCCGCGCGTCGGCGTCGGTGGCACTGGCGGTGGCC
GGCCTCACCCTGTGGCTGTGGTGCGTCTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14124.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis