Browse Element(s) Details


OsAffx.3991.1.S1_at

Description tigr:9632.m03269
TID=OsAffx.3991.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3406011/11hypothetical protein
LOC_Os05g338401/111-deoxy-D-xylulose-5-phosphate synthase, chloroplast, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34020Os.47130.4.A1_x_at3/114+20419153..20419476retrotransposon protein, putative, unclassified
LOC_Os04g34030OsAffx.28340.2.S1_at11/114+20422756..20424111U-box domain containing protein
LOC_Os04g34030OsAffx.28340.1.S1_x_at1/114+20422756..20424111U-box domain containing protein
LOC_Os04g34030OsAffx.3096.1.S1_s_at1/114+20422756..20424111U-box domain containing protein
LOC_Os04g34040OsAffx.3989.1.S1_at9/114+20430232..20433965hypothetical protein
LOC_Os04g34050OsAffx.3990.1.S1_at11/114+20437273..20438530VQ motif family protein, expressed
LOC_Os04g34060OsAffx.3991.1.S1_at11/114+20440192..20440698hypothetical protein
LOC_Os04g34070OsAffx.19542.3.S1_x_at7/114+20442643..20446865retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34080Os.6188.1.S1_at11/114+20453054..20457991WD-40 repeat family protein, putative, expressed
LOC_Os04g34090OsAffx.14124.1.S1_at11/114+20464488..20465406hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016114biological_processterpenoid biosynthesis
GO:0008661molecular_function1-deoxy-D-xylulose-5-phosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3991.1.S1_at--143--3891Chr04:20440613..20440637 (25 bp)
CTGTCCGTGCCACGTCGGAGCTCAT
LOC_Os04g34060
OsAffx.3991.1.S1_at--609--9671Chr04:20440556..20440580 (25 bp)
TCACGCCGGAGCTAGTCGCCGCTGC
LOC_Os04g34060
OsAffx.3991.1.S1_at--171--5911Chr04:20440509..20440533 (25 bp)
GAGCTCGTCGCGGTAGCCACATCCT
LOC_Os04g34060
OsAffx.3991.1.S1_at--466--3331Chr04:20440332..20440356 (25 bp)
CACGTCCATAAGCTCCAACGCCGAG
LOC_Os04g34060
OsAffx.3991.1.S1_at--439--9711Chr04:20440294..20440318 (25 bp)
TCAACACAGCACCTCAGCGACGGCG
LOC_Os04g34060
OsAffx.3991.1.S1_at--776--4492Chr05:19876399..19876423 (25 bp)
GCCGTCCTCAGCTGGCGCGAGTAGC
LOC_Os05g33840
OsAffx.3991.1.S1_at--1136--3911Chr04:20440238..20440262 (25 bp)
CTGGCGCGAGTAGCTGCAGCACGAC
LOC_Os04g34060
OsAffx.3991.1.S1_at--753--4611Chr04:20440233..20440257 (25 bp)
GCGAGTAGCTGCAGCACGACGGTAT
LOC_Os04g34060
OsAffx.3991.1.S1_at--217--6971Chr04:20440229..20440253 (25 bp)
GTAGCTGCAGCACGACGGTATCCCA
LOC_Os04g34060
OsAffx.3991.1.S1_at--171--9051Chr04:20440224..20440248 (25 bp)
TGCAGCACGACGGTATCCCAGTATT
LOC_Os04g34060
OsAffx.3991.1.S1_at--245--3391Chr04:20440222..20440246 (25 bp)
CAGCACGACGGTATCCCAGTATTTA
LOC_Os04g34060
Target Sequence 
CTGTCCGTGCCACGTCGGAGCTCATCGCCGACGGCCGCGTCCTCCGTCATCCACGCCTCACGCCGGAGCTAGTCGCCGCT
GCCGGCATCCTCCACCCCACGCCGGAGCTCGTCGCGGTAGCCACATCCTCCATCATCCACACCCCATGCCGGAGCTCGTT
GCCGACGGCCGCATCTTCCCCTGTCCACGCCACGTTGGAGCTCGTCGCCGGCGTCCGTGTCCTCCTTGCTCCACGTCTAT
CCACTCCGGCGACAGCTGCATCCCCGGCCGTCGCGACAACCCACGTCCATAAGCTCCAACGCCGAGCTCGCGCTGCTCGT
CAACACAGCACCTCAGCGACGGCGGCCAAGCCCCACGCGTCGCTGCCGTCCTCAGCTGGCGCGAGTAGCTGCAGCACGAC
GGTATCCCAGTATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3991.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis