Browse Element(s) Details


OsAffx.3990.1.S1_at

Description tigr:9632.m03268
TID=OsAffx.3990.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=VQ motif, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3405011/11VQ motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34020Os.47130.4.A1_x_at3/114+20419153..20419476retrotransposon protein, putative, unclassified
LOC_Os04g34030OsAffx.28340.2.S1_at11/114+20422756..20424111U-box domain containing protein
LOC_Os04g34030OsAffx.28340.1.S1_x_at1/114+20422756..20424111U-box domain containing protein
LOC_Os04g34030OsAffx.3096.1.S1_s_at1/114+20422756..20424111U-box domain containing protein
LOC_Os04g34040OsAffx.3989.1.S1_at9/114+20430232..20433965hypothetical protein
LOC_Os04g34050OsAffx.3990.1.S1_at11/114+20437273..20438530VQ motif family protein, expressed
LOC_Os04g34060OsAffx.3991.1.S1_at11/114+20440192..20440698hypothetical protein
LOC_Os04g34070OsAffx.19542.3.S1_x_at7/114+20442643..20446865retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34080Os.6188.1.S1_at11/114+20453054..20457991WD-40 repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009870biological_processdefense response signaling pathway, resistance gene-dependent
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3990.1.S1_at--1009--871Chr04:20437640..20437664 (25 bp)
AGGCCCAGGCGCAGGACTACCCGAT
LOC_Os04g34050
OsAffx.3990.1.S1_at--1065--891Chr04:20437646..20437670 (25 bp)
AGGCGCAGGACTACCCGATGATGGA
LOC_Os04g34050
OsAffx.3990.1.S1_at--10--5011Chr04:20437650..20437674 (25 bp)
GCAGGACTACCCGATGATGGACGAG
LOC_Os04g34050
OsAffx.3990.1.S1_at--804--951Chr04:20437652..20437676 (25 bp)
AGGACTACCCGATGATGGACGAGGC
LOC_Os04g34050
OsAffx.3990.1.S1_at--877--2011Chr04:20437655..20437679 (25 bp)
ACTACCCGATGATGGACGAGGCCGC
LOC_Os04g34050
OsAffx.3990.1.S1_at--249--511Chr04:20437756..20437780 (25 bp)
ATCGAGAGGTCCGTCCGCCCGATGC
LOC_Os04g34050
OsAffx.3990.1.S1_at--1057--4151Chr04:20437790..20437814 (25 bp)
CGCCGGAGTACGTGGACATCACGAA
LOC_Os04g34050
OsAffx.3990.1.S1_at--648--3951Chr04:20437793..20437817 (25 bp)
CGGAGTACGTGGACATCACGAACGG
LOC_Os04g34050
OsAffx.3990.1.S1_at--218--571Chr04:20437858..20437882 (25 bp)
ATCCTCGGCTCGATCCGGCCAGGCA
LOC_Os04g34050
OsAffx.3990.1.S1_at--927--4231Chr04:20437945..20437969 (25 bp)
CCGTTCGACGCGAGCTGCATCAGCT
LOC_Os04g34050
OsAffx.3990.1.S1_at--1145--9051Chr04:20437960..20437984 (25 bp)
TGCATCAGCTGGCTCAACGAGCTGA
LOC_Os04g34050
Target Sequence 
AGGCCCAGGCGCAGGACTACCCGATGATGGACGAGGCCGCCGCGCAGCAGTTCTTCCCGCCGGAGCTGCTGCTCTCGCCG
TCGGCCGCGATGTCCCCGGCGGCGAGGCTGGCGACCATCGAGAGGTCCGTCCGCCCGATGCCCGAGCCGGCGCCGGAGTA
CGTGGACATCACGAACGGCGGCGGCGGCGGCGGGGTCGACGACGGCGGCCTCGCGGCGATCCTCGGCTCGATCCGGCCAG
GCATCCTCTCCCCGCTCCCCTCCTCCCTCCCGCCCGCCGCCGTCCCCGGCCAGTTCTCGCCGCTCCCGTTCGACGCGAGC
TGCATCAGCTGGCTCAACGAGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3990.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis