Browse Element(s) Details


OsAffx.3096.1.S1_s_at

Description tigr:9630.m05753
TID=OsAffx.3096.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5770011/11U-box domain containing protein, expressed
LOC_Os04g340301/11U-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57660Os.26408.1.S2_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed
LOC_Os02g57660Os.26408.3.S1_x_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed
LOC_Os02g57660Os.26408.1.S1_x_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed
LOC_Os02g57670Os.5401.1.S1_at11/112+35314447..3531709650S ribosomal protein L9, chloroplast precursor, putative, expressed
LOC_Os02g57690Os.24122.1.A1_at10/112+35319744..35326049kelch repeat-containing protein, putative, expressed
LOC_Os02g57700OsAffx.3096.1.S1_s_at11/112+35328463..35334747U-box domain containing protein, expressed
LOC_Os02g57710Os.46745.1.S1_at11/112+35335865..35341494signal peptide peptidase family protein, expressed
LOC_Os02g57720Os.9222.1.S1_at11/112+35343804..35345571Aquaporin RWC3, putative, expressed
LOC_Os02g57730OsAffx.12682.1.S1_at11/112+35346072..35347837hypothetical protein
LOC_Os02g57740Os.8352.1.S1_at3/112+35349481..35351038hypothetical protein
LOC_Os02g57750Os.17210.1.S1_at11/112+35357005..35363032expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3096.1.S1_s_at--1142--4292Chr02:35334494..35334518 (25 bp)
CCTACTTCGTGTGCCCGATCTTGAA
LOC_Os02g57700
OsAffx.3096.1.S1_s_at--1140--9411Chr02:35334500..35334524 (25 bp)
TCGTGTGCCCGATCTTGAAGGAGGT
LOC_Os02g57700
OsAffx.3096.1.S1_s_at--815--8691Chr02:35334503..35334527 (25 bp)
TGTGCCCGATCTTGAAGGAGGTGAT
LOC_Os02g57700
OsAffx.3096.1.S1_s_at--92--9171Chr02:35334505..35334529 (25 bp)
TGCCCGATCTTGAAGGAGGTGATGC
LOC_Os02g57700
OsAffx.3096.1.S1_s_at--7--9011Chr02:35334515..35334539 (25 bp)
TGAAGGAGGTGATGCGGGACCCGCA
LOC_Os02g57700
OsAffx.3096.1.S1_s_at--255--511Chr02:35334526..35334550 (25 bp)
ATGCGGGACCCGCAGATCGCCGGAG
LOC_Os02g57700
OsAffx.3096.1.S1_s_at--410--1291Chr02:35334539..35334563 (25 bp)
AGATCGCCGGAGACGGGTTCTCGTA
LOC_Os02g57700
OsAffx.3096.1.S1_s_at--42--5991Chr02:35334548..35334572 (25 bp)
GAGACGGGTTCTCGTACGAGGCGGA
LOC_Os02g57700
OsAffx.3096.1.S1_s_at--998--8371Chr02:35334573..35334597 (25 bp)
GGCGATCAGGGAGTGGCTGCGCAGC
LOC_Os02g57700
OsAffx.3096.1.S1_s_at--688--5071Chr02:35334593..35334617 (25 bp)
GCAGCGGGCGCGACACGTCGCCGAT
LOC_Os02g57700
OsAffx.3096.1.S1_s_at--183--4052Chr02:35334614..35334638 (25 bp)
CGATGACGAACCTGAAGCTGCCCCG
LOC_Os02g57700
Target Sequence 
CCTACTTCGTGTGCCCGATCTTGAAGGAGGTGATGCGGGACCCGCAGATCGCCGGAGACGGGTTCTCGTACGAGGCGGAG
GCGATCAGGGAGTGGCTGCGCAGCGGGCGCGACACGTCGCCGATGACGAACCTGAAGCTGCCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3096.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis