Browse Element(s) Details


Os.26408.3.S1_x_at

Description gb:AK073423.1
DB_XREF= gi:32983446
TID=Os.26408.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26408 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 22874 putative phosphatidylinositol-4-phosphate 5-kinase mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044H07, full insert sequence.
FL= gb:AK073423.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5766011/11Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57610Os.19574.1.S1_at11/112+35274698..35278609hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g57620Os.19186.1.S1_at11/112+35280919..35284836expressed protein
LOC_Os02g57630Os.7211.1.S1_a_at11/112+35287543..35290686Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g57640Os.27579.1.A1_at10/112+35291687..35296313expressed protein
LOC_Os02g57650Os.15002.1.S1_at11/112+35297324..35301378No apical meristem protein, expressed
LOC_Os02g57660Os.26408.1.S2_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed
LOC_Os02g57660Os.26408.3.S1_x_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed
LOC_Os02g57660Os.26408.1.S1_x_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed
LOC_Os02g57670Os.5401.1.S1_at11/112+35314447..3531709650S ribosomal protein L9, chloroplast precursor, putative, expressed
LOC_Os02g57690Os.24122.1.A1_at10/112+35319744..35326049kelch repeat-containing protein, putative, expressed
LOC_Os02g57700OsAffx.3096.1.S1_s_at11/112+35328463..35334747U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016307molecular_functionphosphatidylinositol phosphate kinase activity
GO:0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26408.3.S1_x_at--499--5791Chr02:35302724..35302748 (25 bp)
GACGCTCAGGAGGACGATGCTTTCA
LOC_Os02g57660
Os.26408.3.S1_x_at--1003--6331Chr02:35302709..35302733 (25 bp)
GATGCTTTCAACTACCCGGAAGGTC
LOC_Os02g57660
Os.26408.3.S1_x_at--428--2391Chr02:35302656..35302680 (25 bp)
AAACAGTGTGGTTGTTGGCCCTCAC
LOC_Os02g57660
Os.26408.3.S1_x_at--1130--6811Chr02:35302618..35302642 (25 bp)
GTTTACGATCAACAGCCGCTGGATT
LOC_Os02g57660
Os.26408.3.S1_x_at--88--6951Chr02:35302586..35302610 (25 bp)
GTAGATCTACTACTTCCTGGTACAG
LOC_Os02g57660
Os.26408.3.S1_x_at--2--5751Chr02:35302299..35302323 (25 bp)
GACGTGGTCCTTTACCTGGGTATCA
LOC_Os02g57660
Os.26408.3.S1_x_at--300--5891Chr02:35302167..35302191 (25 bp)
GAGCGTTTCCTCAAGTTCATCCAGA
LOC_Os02g57660
Os.26408.3.S1_x_at--437--1431Chr02:35302132..35302156 (25 bp)
AGAAAATTCATAGTGCCCCAGCCAG
LOC_Os02g57660
Os.26408.3.S1_x_at--117--5071Chr02:35302108..35302132 (25 bp)
GCAGCCATTGCGATTATTTCGTCCG
LOC_Os02g57660
Os.26408.3.S1_x_at--878--6571Chr02:35302077..35302101 (25 bp)
GATTCTCCTGCCTTGTGTTATGACA
LOC_Os02g57660
Os.26408.3.S1_x_at--1074--5471Chr02:35302051..35302075 (25 bp)
GAACTTCATTCATAGTGCCTCAGCA
LOC_Os02g57660
Target Sequence 
GACGCTCAGGAGGACGATGCTTTCAACTACCCGGAAGGTCTAGTGTTGGTTCAAAGAGGTGGTGATGAAAACAGTGTGGT
TGTTGGCCCTCACATAAGAGGTAGCCGTTTACGATCAACAGCCGCTGGATTTGCGGAAGTAGATCTACTACTTCCTGGTA
CAGCCAGGCTGCAGATCCAGCTAGGGGTTAACATGCCTGCAAGGGCAGAGCAGAACCCTAAAGAAGAGGAAAGCAAATCG
TTTCGGGAGGTGTACGACGTGGTCCTTTACCTGGGTATCATAGACATATTGCAGGAGTACAACATGTCAAAGAAGATAGA
GCATGCCGTCAAGTCCATGCAGTACGACTCCATCTCCATCTCCGCCGTGGACCCCCAGTTCTACTCGGAGCGTTTCCTCA
AGTTCATCCAGACCGTCTTTCCAGAAAATTCATAGTGCCCCAGCCAGCAGCCATTGCGATTATTTCGTCCGCGGATTGAT
TCTCCTGCCTTGTGTTATGACATGAACTTCATTCATAGTGCCTCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26408.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis