Browse Element(s) Details


Os.19574.1.S1_at

Description gb:AK071390.1
DB_XREF= gi:32981413
TID=Os.19574.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19574 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023093H07, full insert sequence.
FL= gb:AK062205.1 gb:AK061760.1 gb:AK106216.1 gb:AK071390.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5761011/11hydroxyproline-rich glycoprotein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57540Os.6282.1.S1_at11/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57540Os.7054.1.S1_a_at1/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57540Os.7054.2.S1_x_at1/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57550OsAffx.12680.1.S1_at11/112+35255389..35255976hypothetical protein
LOC_Os02g57560Os.49855.1.S1_at11/112+35257337..35259524Protein kinase domain containing protein, expressed
LOC_Os02g57560OsAffx.30454.1.S1_x_at1/112+35257337..35259524Protein kinase domain containing protein, expressed
LOC_Os02g57570OsAffx.24906.1.S1_x_at11/112+35261791..35262961MatE family protein
LOC_Os02g57570OsAffx.24906.1.S1_at11/112+35261791..35262961MatE family protein
LOC_Os02g57580OsAffx.24907.1.S1_at11/112+35263349..35264388hypothetical protein
LOC_Os02g57580Os.9626.2.S1_x_at1/112+35263349..35264388hypothetical protein
LOC_Os02g57590Os.53192.1.S1_s_at11/112+35265730..35268909Fibrillarin-2, putative, expressed
LOC_Os02g57590Os.47666.1.S1_at11/112+35265730..35268909Fibrillarin-2, putative, expressed
LOC_Os02g57600Os.10392.1.S1_at11/112+35269321..35272692expressed protein
LOC_Os02g57600OsAffx.31551.1.S1_at1/112+35269321..35272692expressed protein
LOC_Os02g57610Os.19574.1.S1_at11/112+35274698..35278609hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g57620Os.19186.1.S1_at11/112+35280919..35284836expressed protein
LOC_Os02g57630Os.7211.1.S1_a_at11/112+35287543..35290686Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g57640Os.27579.1.A1_at10/112+35291687..35296313expressed protein
LOC_Os02g57650Os.15002.1.S1_at11/112+35297324..35301378No apical meristem protein, expressed
LOC_Os02g57660Os.26408.1.S2_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed
LOC_Os02g57660Os.26408.3.S1_x_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed
LOC_Os02g57660Os.26408.1.S1_x_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19574.1.S1_at--874--9791Chr02:35278031..35278055 (25 bp)
TAAGCTTCTGTCATTTTTGCTCCTG
LOC_Os02g57610
Os.19574.1.S1_at--305--6491Chr02:35278074..35278098 (25 bp)
GATACCATCATCATAACTGCAGGAG
LOC_Os02g57610
Os.19574.1.S1_at--760--7051Chr02:35278151..35278175 (25 bp)
GTAACTCAGTGTCCAGCTAATATCA
LOC_Os02g57610
Os.19574.1.S1_at--802--3091Chr02:35278229..35278253 (25 bp)
AATACTTCCATGGTGTAGCGTCTGT
LOC_Os02g57610
Os.19574.1.S1_at--44--9991Chr02:35278244..35278268 (25 bp)
TAGCGTCTGTTGTATCCTCCTTAAC
LOC_Os02g57610
Os.19574.1.S1_at--854--9231Chr02:35278261..35278285 (25 bp)
TCCTTAACTGACTGGCTGTTCTGAT
LOC_Os02g57610
Os.19574.1.S1_at--487--1491Chr02:35278363..35278387 (25 bp)
AGCAAGCAAATGACTCTGATCCCCT
LOC_Os02g57610
Os.19574.1.S1_at--760--8831Chr02:35278379..35278403 (25 bp)
TGATCCCCTCTTCAATTAGTTGTGC
LOC_Os02g57610
Os.19574.1.S1_at--499--2251Chr02:35278429..35278453 (25 bp)
AAATATTGTTCTGTCGTGCTTACCA
LOC_Os02g57610
Os.19574.1.S1_at--1139--7191Chr02:35278441..35278465 (25 bp)
GTCGTGCTTACCAGTTCGGCAAGAA
LOC_Os02g57610
Os.19574.1.S1_at--664--3171Chr02:35278552..35278576 (25 bp)
AATTGGGCCAAGTGCTGACTGTTTA
LOC_Os02g57610
Target Sequence 
TAAGCTTCTGTCATTTTTGCTCCTGCTGTTTCTCAGTTCCCCAGATACCATCATCATAACTGCAGGAGATGCAAACTTAT
GCAAAATATTCCAGTTTTAGCGGTAAGTTGGAGTTAGTTAGTAACTCAGTGTCCAGCTAATATCATCATAAGATACTAAA
GGTGATGCAGATTCTGGAACCTGTTGTTATAAAACCATAATACTTCCATGGTGTAGCGTCTGTTGTATCCTCCTTAACTG
ACTGGCTGTTCTGATACTGATGCTGTTTATGTACATAATAAACTAGCGAAAAGAGTAGAACTCTTCCTNGCAGCAGTGTA
TTGTCAGAGTGGAGCAAGCAAATGACTCTGATCCCCTCTTCAATTAGTTGTGCTTTGGCTTTAGCAGAAGAAACTTGAAA
ATATTGTTCTGTCGTGCTTACCAGTTCGGCAAGAATTTCAATTCTGTCTTGGCATATGTGATGTCACATCTCTTATCACA
AATTCTGTAAGCAACACTATTTTGTTGTGCTCTGTATATTAAATTGGGCCAAGTGCTGACTGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis