Browse Element(s) Details


Os.9626.2.S1_x_at

Description gb:AK105950.1
DB_XREF= gi:32991159
TID=Os.9626.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9626 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C12, full insert sequence.
FL= gb:AK105950.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4487011/11MATE efflux family protein, expressed
LOC_Os05g173701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g575801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44830Os.51657.1.S1_at11/118+28022378..28026486zinc finger family protein, putative, expressed
LOC_Os08g44830OsAffx.13726.1.S1_x_at3/118+28022378..28026486zinc finger family protein, putative, expressed
LOC_Os08g44840Os.14153.2.S1_x_at11/118+28030293..28032462Transferase family protein, expressed
LOC_Os08g44850Os.8789.1.S1_at11/118+28037640..28039445C2 domain-containing protein, putative, expressed
LOC_Os08g44860Os.12607.1.S1_s_at11/118+28040442..28048874Peptidase family M1 containing protein, expressed
LOC_Os08g44870Os.9626.2.S1_x_at11/118+28051028..28053023MATE efflux family protein, expressed
LOC_Os08g44870Os.9626.1.S1_at11/118+28051028..28053023MATE efflux family protein, expressed
LOC_Os08g44880NANA8+28054560..28054832hypothetical protein
LOC_Os08g44890OsAffx.29663.1.S1_at11/118+28056581..28061314retrotransposon protein, putative, unclassified
LOC_Os08g44890Os.27345.1.S1_at1/118+28056581..28061314retrotransposon protein, putative, unclassified
LOC_Os08g44890OsAffx.380.1.S1_at1/118+28056581..28061314retrotransposon protein, putative, unclassified
LOC_Os08g44900OsAffx.6141.1.S1_x_at11/118+28063789..28064287hypothetical protein
LOC_Os08g44910Os.56660.1.S1_x_at11/118+28068181..28069878DNA-binding protein, putative, expressed
LOC_Os08g44910Os.44316.2.S1_x_at1/118+28068181..28069878DNA-binding protein, putative, expressed
LOC_Os08g44920NANA8+28071867..28072418retrotransposon protein, putative, unclassified
LOC_Os08g44930Os.18686.1.S1_at11/118+28075910..28078833SNARE domain containing protein, expressed
LOC_Os08g44930Os.8522.1.S1_at1/118+28075910..28078833SNARE domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009835biological_processripening
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9626.2.S1_x_at--358--9671Chr08:28051900..28051924 (25 bp)
TCAGCGACAAGCTGGCGCTCGTCTA
LOC_Os08g44870
Os.9626.2.S1_x_at--1--7832Chr02:35263502..35263522 (21 bp)
GGTCACCATGGTGCTCAACAGCGTG
LOC_Os02g57580
Os.9626.2.S1_x_at--934--4851Chr08:28051699..28051723 (25 bp)
GCTACCTTCTCGGTTACTACTTCAA
LOC_Os08g44870
Os.9626.2.S1_x_at--444--9931Chr08:28051686..28051710 (25 bp)
TTACTACTTCAACCTCGGAGTCGGG
LOC_Os08g44870
Os.9626.2.S1_x_at--833--6971Chr08:28051661..28051685 (25 bp)
GTACCCATTCCTATTCCTATTCCTA
LOC_Os08g44870
Os.9626.2.S1_x_at--652--9513Chr08:28051625..28051649 (25 bp)
TCTCTTTTCTTTTTTCCACTAATAT
LOC_Os08g44870
Os.9626.2.S1_x_at--679--3691Chr08:28051591..28051615 (25 bp)
CTATGCATATGTACTGCGAAATTAT
LOC_Os08g44870
Os.9626.2.S1_x_at--460--4991Chr08:28051509..28051533 (25 bp)
GCATGCTCTGTGGAGTTGCACTTCA
LOC_Os08g44870
Os.9626.2.S1_x_at--47--10751Chr08:28051494..28051518 (25 bp)
TTGCACTTCAAACACTCATTCTACT
LOC_Os08g44870
Os.9626.2.S1_x_at--467--3711Chr08:28051474..28051498 (25 bp)
CTACTCTTTGTAGTCTGGAGAACAG
LOC_Os08g44870
Os.9626.2.S1_x_at--1113--6871Chr08:28051425..28051449 (25 bp)
GTATTATTACATTTTCGTTTTCATT
LOC_Os08g44870
Target Sequence 
TCAGCGACAAGCTGGCGCTCGTCTACACCAGCGACGCCCACCTGCTCCGCGCCGTCTCCAGGATCGCTGGCCTGCTCGGG
GTCACCATGGTGCTCAACAGCGTGCAGCCGGTGCTGTCCGGTGTGGCCGTCGGCGGCGGATGGCAGGGCCTCGTCGCCTA
CATCAACCTCGCCTGCTACTACCTCTTTGGCCTCCCCGTCGGCTACCTTCTCGGTTACTACTTCAACCTCGGAGTCGGGG
TACCCATTCCTATTCCTATTCCTACCTACCTTCCTTCTCTTTTCTTTTTTCCACTAATATAATGGAGTACTATGCATATG
TACTGCGAAATTATATATAATTGATCACAGAAAAAAATTAAAATTAAATTGGCTGCAGGGGGTTTGGGGTGGCATGCTCT
GTGGAGTTGCACTTCAAACACTCATTCTACTCTTTGTAGTCTGGAGAACAGACTGGAAGGCAGAGGTAATATATAGTATT
ATTACATTTTCGTTTTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9626.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis