Browse Element(s) Details


Os.51657.1.S1_at

Description gb:AK063290.1
DB_XREF= gi:32973308
TID=Os.51657.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51657 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-E02, full insert sequence.
FL= gb:AK063290.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4483011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44770Os.5522.1.S1_at10/118+27999601..28002662Superoxide dismutase, chloroplast precursor, putative, expressed
LOC_Os08g44780Os.50081.1.S1_x_at11/118+28002729..28004421expressed protein
LOC_Os08g44790Os.53024.1.S1_at11/118+28004706..28005867Alpha-expansin 3 precursor, putative, expressed
LOC_Os08g44800OsAffx.6139.1.S1_at11/118+28006054..28007512hypothetical protein
LOC_Os08g44810Os.11588.1.S1_at11/118+28008211..28012039Malate dehydrogenase 1, chloroplast precursor, putative, expressed
LOC_Os08g44820Os.9354.2.S1_at11/118+28012033..28016394No apical meristem protein, expressed
LOC_Os08g44820Os.9354.1.S1_at11/118+28012033..28016394No apical meristem protein, expressed
LOC_Os08g44830Os.51657.1.S1_at11/118+28022378..28026486zinc finger family protein, putative, expressed
LOC_Os08g44830OsAffx.13726.1.S1_x_at3/118+28022378..28026486zinc finger family protein, putative, expressed
LOC_Os08g44840Os.14153.2.S1_x_at11/118+28030293..28032462Transferase family protein, expressed
LOC_Os08g44850Os.8789.1.S1_at11/118+28037640..28039445C2 domain-containing protein, putative, expressed
LOC_Os08g44860Os.12607.1.S1_s_at11/118+28040442..28048874Peptidase family M1 containing protein, expressed
LOC_Os08g44870Os.9626.2.S1_x_at11/118+28051028..28053023MATE efflux family protein, expressed
LOC_Os08g44870Os.9626.1.S1_at11/118+28051028..28053023MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51657.1.S1_at--808--7751Chr08:28022951..28022975 (25 bp)
GGTGATCTGCGCAAAGAACCACTAC
LOC_Os08g44830
Os.51657.1.S1_at--626--2791Chr08:28022908..28022932 (25 bp)
AAGATGTACGTGTGCAACCGCTGCG
LOC_Os08g44830
Os.51657.1.S1_at--513--2931Chr08:28022785..28022809 (25 bp)
AAGGACAAGCTTATCGGCCATGTCT
LOC_Os08g44830
Os.51657.1.S1_at--628--2791Chr08:28022707..28022731 (25 bp)
AAGAGGCAGCGATCGTCCTCGGCGT
LOC_Os08g44830
Os.51657.1.S1_at--715--7611Chr08:28022674..28022698 (25 bp)
GGGAACATTGACGACACCACCGGCA
LOC_Os08g44830
Os.51657.1.S1_at--592--3811Chr08:28022634..28022658 (25 bp)
CCTGACGACCTTACTAACTAACTGT
LOC_Os08g44830
Os.51657.1.S1_at--19--10811Chr08:28022607..28022631 (25 bp)
TTGTATTGTTGCCATCACCTGCTGC
LOC_Os08g44830
Os.51657.1.S1_at--77--10511Chr08:28022562..28022586 (25 bp)
TTCAATCCAGTACTGCATGGCTAGT
LOC_Os08g44830
Os.51657.1.S1_at--425--10871Chr08:28022496..28022520 (25 bp)
TTGGAAATCGATCAGGGCAGCAATT
LOC_Os08g44830
Os.51657.1.S1_at--499--7591Chr08:28022482..28022506 (25 bp)
GGGCAGCAATTTCAGGCAGTTTATC
LOC_Os08g44830
Os.51657.1.S1_at--413--8271Chr08:28022468..28022492 (25 bp)
GGCAGTTTATCAGTTAGTTCTATAC
LOC_Os08g44830
Target Sequence 
GGTGATCTGCGCAAAGAACCACTACAAGCGCAGCCATTGCCCCAAGATGTACGTGTGCAACCGCTGCGGCCGCAAGCACT
TCTCCGTCCTCTCCGACCTCCGCACCCACGAGAAGCACTGCGGCGACCACCGCTGGCTCTGCTCCTGCGGCACCTCCTTC
TCCCGCAAGGACAAGCTTATCGGCCATGTCTCCCTCTTCGCCGGCCACCAGCCGGTCATGCCGCTCGACGCCCCCCGCGC
CGGCAAGAGGCAGCGATCGTCCTCGGCGTCCGTCGCCGGGAACATTGACGACACCACCGGCATTGGCATGGGCGCCGCCT
GACGACCTTACTAACTAACTGTGATTGTATTGTTGCCATCACCTGCTGCATATATATGTCCATGAAAGATTCAATCCAGT
ACTGCATGGCTAGTTAAATTAGCATGACAATGCTAATTGGAACACACATGTTAATTTGGAAATCGATCAGGGCAGCAATT
TCAGGCAGTTTATCAGTTAGTTCTATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis