Browse Element(s) Details


Os.11588.1.S1_at

Description gb:AK105935.1
DB_XREF= gi:32991144
TID=Os.11588.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11588 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-B06, full insert sequence.
FL= gb:AK071494.1 gb:AK102598.1 gb:AK105935.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4481011/11Malate dehydrogenase 1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44750Os.5091.1.S1_at11/118+27985889..27988746nodulin MtN21 family protein, putative, expressed
LOC_Os08g44760Os.52402.1.S1_at11/118+27990463..27993793expressed protein
LOC_Os08g44760Os.52402.2.S1_at11/118+27990463..27993793expressed protein
LOC_Os08g44770Os.5522.1.S1_at10/118+27999601..28002662Superoxide dismutase, chloroplast precursor, putative, expressed
LOC_Os08g44780Os.50081.1.S1_x_at11/118+28002729..28004421expressed protein
LOC_Os08g44790Os.53024.1.S1_at11/118+28004706..28005867Alpha-expansin 3 precursor, putative, expressed
LOC_Os08g44800OsAffx.6139.1.S1_at11/118+28006054..28007512hypothetical protein
LOC_Os08g44810Os.11588.1.S1_at11/118+28008211..28012039Malate dehydrogenase 1, chloroplast precursor, putative, expressed
LOC_Os08g44820Os.9354.2.S1_at11/118+28012033..28016394No apical meristem protein, expressed
LOC_Os08g44820Os.9354.1.S1_at11/118+28012033..28016394No apical meristem protein, expressed
LOC_Os08g44830Os.51657.1.S1_at11/118+28022378..28026486zinc finger family protein, putative, expressed
LOC_Os08g44830OsAffx.13726.1.S1_x_at3/118+28022378..28026486zinc finger family protein, putative, expressed
LOC_Os08g44840Os.14153.2.S1_x_at11/118+28030293..28032462Transferase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0016615molecular_functionmalate dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11588.1.S1_at--148--4511Chr08:28011070..28011094 (25 bp)
GCCGTTTCCATCGTGGATGCTATTA
LOC_Os08g44810
Os.11588.1.S1_at--691--2631Chr08:28011106..28011130 (25 bp)
AATCCTACCCCAGAAGGCGATTGGT
LOC_Os08g44810
Os.11588.1.S1_at--205--8231Chr08:28011421..28011445 (25 bp)
GGCAATGGACGATTTCCTCTGGGAA
LOC_Os08g44810
Os.11588.1.S1_at--809--7351Chr08:28011558..28011582 (25 bp)
GTGAAGCTGAATTGCTCGCCGAGAA
LOC_Os08g44810
Os.11588.1.S1_at--74--611Chr08:28011586..28011610 (25 bp)
ATGCGTTGCCCATCTTACTGGAGAG
LOC_Os08g44810
Os.11588.1.S1_at--943--2992Chr08:28011717..28011741 (25 bp)
AATGCATTTTGTGATCTTCCCGGAG
LOC_Os08g44810
Os.11588.1.S1_at--137--5991Chr08:28011739..28011763 (25 bp)
GAGACACCATGCTTCCAGGAGAAAT
LOC_Os08g44810
Os.11588.1.S1_at--807--1471Chr08:28011766..28011790 (25 bp)
AGAATCATTGTTGCGGTAACCCTGG
LOC_Os08g44810
Os.11588.1.S1_at--964--7051Chr08:28011781..28011805 (25 bp)
GTAACCCTGGCTTGTGTTATTTCAC
LOC_Os08g44810
Os.11588.1.S1_at--739--2031Chr08:28011942..28011966 (25 bp)
ACTATGTTGCCGAGTTTGTACACTA
LOC_Os08g44810
Os.11588.1.S1_at--776--10011Chr08:28012003..28012027 (25 bp)
TAGCATATACTTCTGGATTTTCCCA
LOC_Os08g44810
Target Sequence 
GCCGTTTCCATCGTGGATGCTATTAGGTCCCTTGTAAATCCTACCCCAGAAGGCGATTGGTTCTCTACTGGGGTTTATAC
GACTGGAAATCCTTATGGCATAGCAGAGGACATCGTGTTCAGTATGCCATGCAGGTCAAAGGGTGATGGTGACTACGAAC
TAGTTAAAGATGTGGCAATGGACGATTTCCTCTGGGAACGGATAAAAAAGAGTGAAGCTGAATTGCTCGCCGAGAAAAGA
TGCGTTGCCCATCTTACTGGAGAGGGCAATGCATTTTGTGATCTTCCCGGAGACACCATGCTTCCAGGAGAAATGTAGAA
TCATTGTTGCGGTAACCCTGGCTTGTGTTATTTCACAGGGGTTTTCGACGGAAACACACACACACAAACTACTAGTAGCT
GAGAGAAACAACTGCTTGCAGATTACTTGCAGCAGTTATTTATACGTATGTATAATAAGTATTTATTTAATAAGGATGCC
ACAGAAATTTCAACTATGTTGCCGAGTTTGTACACTATAATACAATCAACCAAATGCAATGCGGCTGATCGTATAGCATA
TACTTCTGGATTTTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11588.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis