Browse Element(s) Details


Os.14153.2.S1_x_at

Description gb:AK109443.2
DB_XREF= gi:42821757
TID=Os.14153.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14153 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for metallothionein-like protein, partial sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-312-A03, full insert sequence.
FL= gb:AK109443.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4484011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44790Os.53024.1.S1_at11/118+28004706..28005867Alpha-expansin 3 precursor, putative, expressed
LOC_Os08g44800OsAffx.6139.1.S1_at11/118+28006054..28007512hypothetical protein
LOC_Os08g44810Os.11588.1.S1_at11/118+28008211..28012039Malate dehydrogenase 1, chloroplast precursor, putative, expressed
LOC_Os08g44820Os.9354.2.S1_at11/118+28012033..28016394No apical meristem protein, expressed
LOC_Os08g44820Os.9354.1.S1_at11/118+28012033..28016394No apical meristem protein, expressed
LOC_Os08g44830Os.51657.1.S1_at11/118+28022378..28026486zinc finger family protein, putative, expressed
LOC_Os08g44830OsAffx.13726.1.S1_x_at3/118+28022378..28026486zinc finger family protein, putative, expressed
LOC_Os08g44840Os.14153.2.S1_x_at11/118+28030293..28032462Transferase family protein, expressed
LOC_Os08g44850Os.8789.1.S1_at11/118+28037640..28039445C2 domain-containing protein, putative, expressed
LOC_Os08g44860Os.12607.1.S1_s_at11/118+28040442..28048874Peptidase family M1 containing protein, expressed
LOC_Os08g44870Os.9626.2.S1_x_at11/118+28051028..28053023MATE efflux family protein, expressed
LOC_Os08g44870Os.9626.1.S1_at11/118+28051028..28053023MATE efflux family protein, expressed
LOC_Os08g44880NANA8+28054560..28054832hypothetical protein
LOC_Os08g44890OsAffx.29663.1.S1_at11/118+28056581..28061314retrotransposon protein, putative, unclassified
LOC_Os08g44890Os.27345.1.S1_at1/118+28056581..28061314retrotransposon protein, putative, unclassified
LOC_Os08g44890OsAffx.380.1.S1_at1/118+28056581..28061314retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14153.2.S1_x_at--469--4451Chr08:28030720..28030744 (25 bp)
GCGCTTCAGGGTGTACGACGTCGAC
LOC_Os08g44840
Os.14153.2.S1_x_at--1028--8391Chr08:28030662..28030686 (25 bp)
GGCGCCAACAACAAGTTCGACGGGA
LOC_Os08g44840
Os.14153.2.S1_x_at--447--10631Chr08:28030647..28030671 (25 bp)
TTCGACGGGATGGTCTACCTCTACC
LOC_Os08g44840
Os.14153.2.S1_x_at--622--8131Chr08:28030555..28030579 (25 bp)
GGACAAGGACCAAGACTTCCTCCAA
LOC_Os08g44840
Os.14153.2.S1_x_at--446--6291Chr08:28030480..28030504 (25 bp)
GATGATTCATCAGCTGCATGTTACT
LOC_Os08g44840
Os.14153.2.S1_x_at--893--4991Chr08:28030465..28030489 (25 bp)
GCATGTTACTCCCTAGTAGTCTTGT
LOC_Os08g44840
Os.14153.2.S1_x_at--627--6931Chr08:28030450..28030474 (25 bp)
GTAGTCTTGTTCCTCCTAAATTGCA
LOC_Os08g44840
Os.14153.2.S1_x_at--471--9251Chr08:28030437..28030461 (25 bp)
TCCTAAATTGCAACTTCTCCTACTA
LOC_Os08g44840
Os.14153.2.S1_x_at--87--10591Chr08:28030423..28030447 (25 bp)
TTCTCCTACTACTCCTTTATGTTTA
LOC_Os08g44840
Os.14153.2.S1_x_at--434--831Chr08:28030385..28030409 (25 bp)
ATGGATTCCTTGTTGCTTGCTACTA
LOC_Os08g44840
Os.14153.2.S1_x_at--918--10831Chr08:28030337..28030361 (25 bp)
TTGTGTACTATGTTGCTTGCAAGCT
LOC_Os08g44840
Target Sequence 
GCGCTTCAGGGTGTACGACGTCGACTTCGGCTTCGGCCGCCCGGAGCGGGTGCGAAGCGGCGCCAACAACAAGTTCGACG
GGATGGTCTACCTCTACCCGGGCCGCGGCGGCGACGGCGGCATCGACGTCGAGCTCTCGCTGCAGCCGGAGCCGATGCAG
AGGTTGGACAAGGACCAAGACTTCCTCCAAATGCGAGCCCCTTAATTCTTTTTTTTTTCTTTTATACTCCTATATATTAT
GATGATTCATCAGCTGCATGTTACTCCCTAGTAGTCTTGTTCCTCCTAAATTGCAACTTCTCCTACTACTCCTTTATGTT
TAGTTGGATGCATGCATGGATTCCTTGTTGCTTGCTACTATTTATATATAGTGGAGTACTATGTTGTGTACTATGTTGCT
TGCAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14153.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis