Browse Element(s) Details


OsAffx.380.1.S1_at

Description gb:NM_194972.1
DB_XREF= gi:37531303
TID=OsAffx.380.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative non-LTR retroelement reverse transcriptase (OSJNBb0042K08.2), mRNA.
PROD=putative non-LTR retroelement reversetranscriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0741011/11retrotransposon protein, putative, unclassified
LOC_Os01g121704/11retrotransposon protein, putative, unclassified
LOC_Os06g028804/11retrotransposon protein, putative, unclassified
LOC_Os08g022403/11retrotransposon protein, putative, unclassified
LOC_Os02g572303/11retrotransposon protein, putative, unclassified
LOC_Os01g420203/11retrotransposon protein, putative, LINE subclass
LOC_Os01g286602/11hypothetical protein
LOC_Os11g066202/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g265101/11retrotransposon protein, putative, unclassified
LOC_Os07g129501/11transposon protein, putative, Mutator sub-class
LOC_Os11g272101/11retrotransposon protein, putative, unclassified
LOC_Os05g255701/11retrotransposon protein, putative, unclassified
LOC_Os08g448901/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07380OsAffx.30330.1.S1_at9/1110+3875801..3880800expressed protein
LOC_Os10g07390OsAffx.30331.1.S1_at11/1110+3887830..3889046hypothetical protein
LOC_Os10g07400Os.11024.1.S1_at11/1110+3892249..3896819NB-ARC domain containing protein, expressed
LOC_Os10g07410OsAffx.380.1.S1_at11/1110+3901025..3907698retrotransposon protein, putative, unclassified
LOC_Os10g07410OsAffx.8801.1.S1_at3/1110+3901025..3907698retrotransposon protein, putative, unclassified
LOC_Os10g07410OsAffx.1283.1.S1_at2/1110+3901025..3907698retrotransposon protein, putative, unclassified
LOC_Os10g07420OsAffx.25595.2.S1_x_at3/1110+3910457..3910903hypothetical protein
LOC_Os10g07420OsAffx.25595.2.S1_at2/1110+3910457..3910903hypothetical protein
LOC_Os10g07430Os.46567.1.S1_at11/1110+3917158..3919926expressed protein
LOC_Os10g07440NANA10+3925348..3926042expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.380.1.S1_at--474--296Chr10:3907106..3907130 (25 bp)
ATAGACCTATATGCTTACTTAATGT
LOC_Os10g07410
OsAffx.380.1.S1_at--1136--5471Chr10:3907166..3907190 (25 bp)
GAACAATGGATATCGCTCAAAAGGT
LOC_Os10g07410
OsAffx.380.1.S1_at--208--10075Chr10:3907194..3907218 (25 bp)
TAGTCCTACTCAAACAGCGTTCATT
LOC_Os10g07410
OsAffx.380.1.S1_at--106--9914Chr10:3907200..3907224 (25 bp)
TACTCAAACAGCGTTCATTCCTGGG
LOC_Os10g07410
OsAffx.380.1.S1_at--376--29311Chr10:3907376..3907400 (25 bp)
AAGGCTTTTCTCCTAGATGGTGTGA
LOC_Os10g07410
OsAffx.380.1.S1_at--540--7952Chr10:3907403..3907427 (25 bp)
GGATAGCATCTTTTATTCAAGGCGA
LOC_Os10g07410
OsAffx.380.1.S1_at--1152--9236Chr10:3907500..3907524 (25 bp)
TCCTTTATCTCCTATTCTTTTTAAT
LOC_Os10g07410
OsAffx.380.1.S1_at--34--1619Chr11:3194847..3194870 (24 bp)
AGCTGACATGCTTACTCTATTGATC
LOC_Os11g06620
OsAffx.380.1.S1_at--125--6551Chr10:3907587..3907611 (25 bp)
GATTATTCCCCATCTTGTTGACGAT
LOC_Os10g07410
OsAffx.380.1.S1_at--181--9591Chr10:3907599..3907623 (25 bp)
TCTTGTTGACGATGGTTTGTCTATC
LOC_Os10g07410
OsAffx.380.1.S1_at--829--71510Chr11:3194934..3195317 (25 bp)
GTCTATCTTGCAATACGCATATGAT
LOC_Os11g06620
Target Sequence 
ATAGACCTATATGCTTACTTAATGTTAGCTTTAAGATTTTTACCAAAATTGCTACAAATAGAACAATGGATATCGCTCAA
AAGGTAATTAGTCCTACTCAAACAGCGTTCATTCCTGGGAGAAATATTATGGAAGGGGTGCTTATTTTACATGAGACTTT
ACATGAATTACATCGCAAAGATAAAAGCGGTGTAATTTTTAAGATTGATTTTGAGAAAGCTTATGACAAAGTTAAATGGC
CTTTTGTACAACAAAAAACTTTGAGAATGAAAGGCTTTTCTCCTAGATGGTGTGAGTGGATAGCATCTTTTATTCAAGGC
GATGATGTTGGTATAAAGGTTAACGATCAAATTGGTAATTGTTTTCAAACTTACAAAGGTTTTAGGCAAGGGGATCCTTT
ATCTCCTATTCTTTTTAATATAGTAGCTGACATGCTTACTCTATTGATCAAGATGGCTAAAGAGGTGGGACTATTGAATG
GGATTATTCCCCATCTTGTTGACGATGGTTTGTCTATCTTGCAATACGCATATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.380.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis