Browse Element(s) Details


OsAffx.1283.1.S1_at

Description gb:NM_188365.1
DB_XREF= gi:34903813
GEN=OSJNBa0016I09.20
TID=OsAffx.1283.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0016I09.20 (OSJNBa0016I09.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g074102/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07380OsAffx.30330.1.S1_at9/1110+3875801..3880800expressed protein
LOC_Os10g07390OsAffx.30331.1.S1_at11/1110+3887830..3889046hypothetical protein
LOC_Os10g07400Os.11024.1.S1_at11/1110+3892249..3896819NB-ARC domain containing protein, expressed
LOC_Os10g07410OsAffx.380.1.S1_at11/1110+3901025..3907698retrotransposon protein, putative, unclassified
LOC_Os10g07410OsAffx.8801.1.S1_at3/1110+3901025..3907698retrotransposon protein, putative, unclassified
LOC_Os10g07410OsAffx.1283.1.S1_at2/1110+3901025..3907698retrotransposon protein, putative, unclassified
LOC_Os10g07420OsAffx.25595.2.S1_x_at3/1110+3910457..3910903hypothetical protein
LOC_Os10g07420OsAffx.25595.2.S1_at2/1110+3910457..3910903hypothetical protein
LOC_Os10g07430Os.46567.1.S1_at11/1110+3917158..3919926expressed protein
LOC_Os10g07440NANA10+3925348..3926042expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1283.1.S1_at--658--3091Chr01:5875714..5875738 (25 bp)
AATACTGAGCATATTGCGTGCCTTC
NONE
OsAffx.1283.1.S1_at--360--4011Chr01:5875730..5875754 (25 bp)
CGTGCCTTCCTATGGTTTGGGACAA
NONE
OsAffx.1283.1.S1_at--1152--7611Chr01:5875748..5875772 (25 bp)
GGGACAACCAACCAATGGCAGCCAT
NONE
OsAffx.1283.1.S1_at--285--9431Chr01:5875786..5875810 (25 bp)
TCGTGGTCACGGACAGAAGCCGAGA
NONE
OsAffx.1283.1.S1_at--435--4772Chr10:3905987..3906007 (21 bp)
GCTGCTGCACTGGAGAAGCAACCTC
LOC_Os10g07410
OsAffx.1283.1.S1_at--371--5392Chr10:3905997..3906021 (25 bp)
GAAGCAACCTCATGGCTCAATGGGT
LOC_Os10g07410
OsAffx.1283.1.S1_at--70--2991Chr01:5875871..5876306 (25 bp)
AATGTGTTCATGGAATGGCCGACGT
NONE
OsAffx.1283.1.S1_at--654--8111NONE
GGACGACATCATTTATTTGTCTGTC
NONE
OsAffx.1283.1.S1_at--531--2671Chr01:5878037..5878061 (25 bp)
AAGCCCACGATGGTTGTTTTGGACT
NONE
OsAffx.1283.1.S1_at--469--10231Chr01:5878054..5878078 (25 bp)
TTTGGACTGGGAAGTGTCAGCGTAC
NONE
OsAffx.1283.1.S1_at--230--3391Chr01:5878071..5878095 (25 bp)
CAGCGTACGCGAGCTGAAGCAACTT
NONE
Target Sequence 
AATACTGAGCATATTGCGTGCCTTCCTATGGTTTGGGACAACCAACCAATGGCAGCCATCTGCAGGCGCTGCTCGTGGTC
ACGGACAGAAGCCGAGAACAAGCAGCTGATCGACAAGCTGCTGCACTGGAGAAGCAACCTCATGGCTCAATGGGTTGAAT
GTGTTCATGGAATGGCCGACGTGGTGGACGACATCATTTATTTGTCTGTCAAAGCCCACGATGGTTGTTTTGGACTGGGA
AGTGTCAGCGTACGCGAGCTGAAGCAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis