Browse Element(s) Details


Os.12607.1.S1_s_at

Description gb:AK066773.1
DB_XREF= gi:32976791
TID=Os.12607.1
CNT=88
FEA=FLmRNA
TIER=FL+Stack
STK=19
UG=Os.12607 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013081C24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013081C24, full insert sequence.
FL= gb:AK064900.1 gb:AK066773.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4486011/11Peptidase family M1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44820Os.9354.2.S1_at11/118+28012033..28016394No apical meristem protein, expressed
LOC_Os08g44820Os.9354.1.S1_at11/118+28012033..28016394No apical meristem protein, expressed
LOC_Os08g44830Os.51657.1.S1_at11/118+28022378..28026486zinc finger family protein, putative, expressed
LOC_Os08g44830OsAffx.13726.1.S1_x_at3/118+28022378..28026486zinc finger family protein, putative, expressed
LOC_Os08g44840Os.14153.2.S1_x_at11/118+28030293..28032462Transferase family protein, expressed
LOC_Os08g44850Os.8789.1.S1_at11/118+28037640..28039445C2 domain-containing protein, putative, expressed
LOC_Os08g44860Os.12607.1.S1_s_at11/118+28040442..28048874Peptidase family M1 containing protein, expressed
LOC_Os08g44870Os.9626.2.S1_x_at11/118+28051028..28053023MATE efflux family protein, expressed
LOC_Os08g44870Os.9626.1.S1_at11/118+28051028..28053023MATE efflux family protein, expressed
LOC_Os08g44880NANA8+28054560..28054832hypothetical protein
LOC_Os08g44890OsAffx.29663.1.S1_at11/118+28056581..28061314retrotransposon protein, putative, unclassified
LOC_Os08g44890Os.27345.1.S1_at1/118+28056581..28061314retrotransposon protein, putative, unclassified
LOC_Os08g44890OsAffx.380.1.S1_at1/118+28056581..28061314retrotransposon protein, putative, unclassified
LOC_Os08g44900OsAffx.6141.1.S1_x_at11/118+28063789..28064287hypothetical protein
LOC_Os08g44910Os.56660.1.S1_x_at11/118+28068181..28069878DNA-binding protein, putative, expressed
LOC_Os08g44910Os.44316.2.S1_x_at1/118+28068181..28069878DNA-binding protein, putative, expressed
LOC_Os08g44920NANA8+28071867..28072418retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009926biological_processauxin polar transport
GO:0005886cellular_componentplasma membrane
GO:0004179molecular_functionmembrane alanyl aminopeptidase activity
GO:0009983molecular_functiontyrosine aminopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12607.1.S1_s_at--42--5191Chr08:28041324..28041348 (25 bp)
GCAAGTGGTTTGCTCTTCAAGCTAC
LOC_Os08g44860
Os.12607.1.S1_s_at--521--7871Chr08:28041318..28041342 (25 bp)
GGTTTGCTCTTCAAGCTACATCAGA
LOC_Os08g44860
Os.12607.1.S1_s_at--134--2711Chr08:28041306..28041330 (25 bp)
AAGCTACATCAGACATCCCTGGAAA
LOC_Os08g44860
Os.12607.1.S1_s_at--393--1411Chr08:28041296..28041320 (25 bp)
AGACATCCCTGGAAATGTTGCTAAC
LOC_Os08g44860
Os.12607.1.S1_s_at--624--8151Chr08:28041286..28041310 (25 bp)
GGAAATGTTGCTAACGTTCAAAAGT
LOC_Os08g44860
Os.12607.1.S1_s_at--902--9691Chr08:28041269..28041293 (25 bp)
TCAAAAGTTACTTGGTCACCCTGCT
LOC_Os08g44860
Os.12607.1.S1_s_at--460--8591Chr08:28041257..28041281 (25 bp)
TGGTCACCCTGCTTTTGACATGAGG
LOC_Os08g44860
Os.12607.1.S1_s_at--564--9051Chr08:28041248..28041272 (25 bp)
TGCTTTTGACATGAGGAATCCGAAC
LOC_Os08g44860
Os.12607.1.S1_s_at--796--5251Chr08:28041159..28041257 (25 bp)
GAATCCGAACAAGGTGTATTCGCTA
LOC_Os08g44860
Os.12607.1.S1_s_at--346--2891Chr08:28041149..28041172 (24 bp)
AAGGTGTATTCGCTAATTGGAGGAT
LOC_Os08g44860
Os.12607.1.S1_s_at--924--11Chr08:28041134..28041158 (25 bp)
ATTGGAGGATTTTGTGGGTCCCCTG
LOC_Os08g44860
Target Sequence 
GCAAGTGGTTTGCTCTTCAAGCTACATCAGACATCCCTGGAAATGTTGCTAACGTTCAAAAGTTACTTGGTCACCCTGCT
TTTGACATGAGGAATCCGAACAAGGTGTATTCGCTAATTGGAGGATTTTGTGGGTCCCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12607.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis