Browse Element(s) Details


Os.56660.1.S1_x_at

Description gb:AK110263.1
DB_XREF= gi:32995472
TID=Os.56660.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56660 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-163-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-163-B06, full insert sequence.
FL= gb:AK110263.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4491011/11DNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44860Os.12607.1.S1_s_at11/118+28040442..28048874Peptidase family M1 containing protein, expressed
LOC_Os08g44870Os.9626.2.S1_x_at11/118+28051028..28053023MATE efflux family protein, expressed
LOC_Os08g44870Os.9626.1.S1_at11/118+28051028..28053023MATE efflux family protein, expressed
LOC_Os08g44880NANA8+28054560..28054832hypothetical protein
LOC_Os08g44890OsAffx.29663.1.S1_at11/118+28056581..28061314retrotransposon protein, putative, unclassified
LOC_Os08g44890Os.27345.1.S1_at1/118+28056581..28061314retrotransposon protein, putative, unclassified
LOC_Os08g44890OsAffx.380.1.S1_at1/118+28056581..28061314retrotransposon protein, putative, unclassified
LOC_Os08g44900OsAffx.6141.1.S1_x_at11/118+28063789..28064287hypothetical protein
LOC_Os08g44910Os.56660.1.S1_x_at11/118+28068181..28069878DNA-binding protein, putative, expressed
LOC_Os08g44910Os.44316.2.S1_x_at1/118+28068181..28069878DNA-binding protein, putative, expressed
LOC_Os08g44920NANA8+28071867..28072418retrotransposon protein, putative, unclassified
LOC_Os08g44930Os.18686.1.S1_at11/118+28075910..28078833SNARE domain containing protein, expressed
LOC_Os08g44930Os.8522.1.S1_at1/118+28075910..28078833SNARE domain containing protein, expressed
LOC_Os08g44940OsAffx.17516.1.S1_at11/118+28079882..28080921LOB domain protein 29, putative
LOC_Os08g44950OsAffx.17517.1.S1_at11/118+28087470..28088195Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g44960OsAffx.29664.1.S1_at11/118+28091477..28091887AP2 domain containing protein, expressed
LOC_Os08g44970Os.10827.1.S1_x_at11/118+28094240..28098029transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44970Os.46055.2.S1_x_at5/118+28094240..28098029transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56660.1.S1_x_at--593--4151Chr08:28068603..28068627 (25 bp)
CGCCGATCCACTACTTTTCGGCGGG
LOC_Os08g44910
Os.56660.1.S1_x_at--215--4551Chr08:28068522..28068546 (25 bp)
GCCCTACTAGCTCTCTAGCTAGATT
LOC_Os08g44910
Os.56660.1.S1_x_at--961--10471Chr08:28068491..28068515 (25 bp)
TTAAGCTTCATGAATTAAATCCTTG
LOC_Os08g44910
Os.56660.1.S1_x_at--947--2251Chr08:28068475..28068499 (25 bp)
AAATCCTTGCTTAATTAATTGGCAT
LOC_Os08g44910
Os.56660.1.S1_x_at--1071--10191Chr08:28068414..28068438 (25 bp)
TATATATAGCTAGCCAGCTCGAGCT
LOC_Os08g44910
Os.56660.1.S1_x_at--421--5172Chr08:28068358..28068382 (25 bp)
GCAAGATCGATCCAAGCTATATAAG
LOC_Os08g44910
Os.56660.1.S1_x_at--820--10431Chr08:28068313..28068337 (25 bp)
TTAGTGGTTCAAGTGCCAGGGCCAT
LOC_Os08g44910
Os.56660.1.S1_x_at--141--4432Chr08:28068299..28068323 (25 bp)
GCCAGGGCCATATATATTTCTCTTT
LOC_Os08g44910
Os.56660.1.S1_x_at--775--3671Chr08:28068274..28068298 (25 bp)
CTTTAGCATTTGTGTGTAGTATAGC
LOC_Os08g44910
Os.56660.1.S1_x_at--222--71Chr08:28068219..28068243 (25 bp)
ATTGCTGTGTTGTGTGTTTGGTTTA
LOC_Os08g44910
Os.56660.1.S1_x_at--320--6872Chr08:28068204..28068228 (25 bp)
GTTTGGTTTACTTCACATATCTATA
LOC_Os08g44910
Target Sequence 
CGCCGATCCACTACTTTTCGGCGGGGGAATGCACGACGCCGGGCTTGCTGCATGGCACCATGCCCGCCCTCCGCCGCCGC
CGCCCTACTAGCTCTCTAGCTAGATTAATTAATTAAGCTTCATGAATTAAATCCTTGCTTAATTAATTGGCATATATATA
TACTCACATGATATATATGATCAACAAGCTATATATAGCTAGCCAGCTCGAGCTAATTAATTAACAAAAGGTGAGCCAAT
ATAATGCAAGATCGATCCAAGCTATATAAGTACGTTTATACAGGTAAATTTTAGTGGTTCAAGTGCCAGGGCCATATATA
TTTCTCTTTCTTTAGCATTTGTGTGTAGTATAGCAGCAATAGCTTAATCAAACATCACCAAGTAATTGCTGTGTTGTGTG
TTTGGTTTACTTCACATATCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56660.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis