Browse Element(s) Details


OsAffx.17517.1.S1_at

Description tigr:9636.m04585
TID=OsAffx.17517.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4495011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44900OsAffx.6141.1.S1_x_at11/118+28063789..28064287hypothetical protein
LOC_Os08g44910Os.56660.1.S1_x_at11/118+28068181..28069878DNA-binding protein, putative, expressed
LOC_Os08g44910Os.44316.2.S1_x_at1/118+28068181..28069878DNA-binding protein, putative, expressed
LOC_Os08g44920NANA8+28071867..28072418retrotransposon protein, putative, unclassified
LOC_Os08g44930Os.18686.1.S1_at11/118+28075910..28078833SNARE domain containing protein, expressed
LOC_Os08g44930Os.8522.1.S1_at1/118+28075910..28078833SNARE domain containing protein, expressed
LOC_Os08g44940OsAffx.17516.1.S1_at11/118+28079882..28080921LOB domain protein 29, putative
LOC_Os08g44950OsAffx.17517.1.S1_at11/118+28087470..28088195Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g44960OsAffx.29664.1.S1_at11/118+28091477..28091887AP2 domain containing protein, expressed
LOC_Os08g44970Os.10827.1.S1_x_at11/118+28094240..28098029transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44970Os.46055.2.S1_x_at5/118+28094240..28098029transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44980NANA8+28098638..28098910hypothetical protein
LOC_Os08g44990OsAffx.25936.7.S1_s_at11/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44990OsAffx.25936.1.S1_s_at11/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44990OsAffx.25936.1.S1_at6/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44990OsAffx.25936.2.S1_x_at5/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44990OsAffx.25936.5.S1_x_at1/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g45000Os.50055.1.S1_at11/118+28111359..28113185phosphate:H+ symporter family protein, expressed
LOC_Os08g45000OsAffx.11592.1.S1_x_at1/118+28111359..28113185phosphate:H+ symporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17517.1.S1_at--260--10571Chr08:28088004..28088028 (25 bp)
TTCTTTCTTCTTAGCCGCCGATCAA
LOC_Os08g44950
OsAffx.17517.1.S1_at--299--1131Chr08:28087888..28087912 (25 bp)
AGTGCGGCGTGTGCCTGGGCGAGTT
LOC_Os08g44950
OsAffx.17517.1.S1_at--429--9451Chr08:28087765..28087789 (25 bp)
TCTGCAGGGCCCATGTCACCGTCGA
LOC_Os08g44950
OsAffx.17517.1.S1_at--874--7211Chr08:28087745..28087769 (25 bp)
GTCGACACCAACCACATTGCTGCTG
LOC_Os08g44950
OsAffx.17517.1.S1_at--305--5791Chr08:28087700..28087724 (25 bp)
GACGACGACCAGTTGCTCTCCGGCG
LOC_Os08g44950
OsAffx.17517.1.S1_at--464--1871Chr08:28087696..28087720 (25 bp)
ACGACCAGTTGCTCTCCGGCGTGCA
LOC_Os08g44950
OsAffx.17517.1.S1_at--1029--4931Chr08:28087567..28087591 (25 bp)
GCAGGGAACCAAAGCCCGCCGTCTT
LOC_Os08g44950
OsAffx.17517.1.S1_at--440--2671Chr08:28087556..28087580 (25 bp)
AAGCCCGCCGTCTTAGAGTCAGAGA
LOC_Os08g44950
OsAffx.17517.1.S1_at--268--7151Chr08:28087547..28087571 (25 bp)
GTCTTAGAGTCAGAGAGGCCTAGTA
LOC_Os08g44950
OsAffx.17517.1.S1_at--415--891Chr08:28087532..28087556 (25 bp)
AGGCCTAGTAGGACGCTGCGCAGAT
LOC_Os08g44950
OsAffx.17517.1.S1_at--517--4291Chr08:28087529..28087553 (25 bp)
CCTAGTAGGACGCTGCGCAGATCCT
LOC_Os08g44950
Target Sequence 
TTCTTTCTTCTTAGCCGCCGATCAACCCCGCCGCGGCCTCGGCCTGGAGGAGGCGGCCATCCGCCGCATACCAACGCTCC
GCTACCAGCAGCAGCAGCAGCACAACAAGCAGCAGCAGTGCGGCGTGTGCCTGGGCGAGTTCCGCGAGGGGGAGAGGCTC
AGGCGGCTGCCCCCCTGCCTCCACTCCTTCCACATCGACTGCATCGACGCCTGGCTCGCCACCGCCCTCACCTGCCCGCT
CTGCAGGGCCCATGTCACCGTCGACACCAACCACATTGCTGCTGCTACCACCAGCACGCGGCACGACGACGACCAGTTGC
TCTCCGGCGTGCACCAGCCGATGAGGAGGTCGTTCTCCCTCGACTCCTGCCACCTCTACCTCGCCATCATTTTGCACCCG
CACCAACTCTCCGACTCCGACACCCGCAGCCGCAGCCGCAGGGAACCAAAGCCCGCCGTCTTAGAGTCAGAGAGGCCTAG
TAGGACGCTGCGCAGATCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17517.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis