Browse Element(s) Details


Os.50055.1.S1_at

Description gb:AK119787.1
DB_XREF= gi:37989410
TID=Os.50055.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50055 (NCBI UniGene Cluster)
UG_TITLE=(indica cultivar-group) putative high-affinity phosphate transporter HAPT mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-D01, full insert sequence.
FL= gb:AF335588.2 gb:AY100468.1 gb:AK119787.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4500011/11phosphate:H+ symporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44950OsAffx.17517.1.S1_at11/118+28087470..28088195Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g44960OsAffx.29664.1.S1_at11/118+28091477..28091887AP2 domain containing protein, expressed
LOC_Os08g44970Os.10827.1.S1_x_at11/118+28094240..28098029transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44970Os.46055.2.S1_x_at5/118+28094240..28098029transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44980NANA8+28098638..28098910hypothetical protein
LOC_Os08g44990OsAffx.25936.7.S1_s_at11/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44990OsAffx.25936.1.S1_s_at11/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44990OsAffx.25936.1.S1_at6/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44990OsAffx.25936.2.S1_x_at5/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44990OsAffx.25936.5.S1_x_at1/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g45000Os.50055.1.S1_at11/118+28111359..28113185phosphate:H+ symporter family protein, expressed
LOC_Os08g45000OsAffx.11592.1.S1_x_at1/118+28111359..28113185phosphate:H+ symporter family protein, expressed
LOC_Os08g45010Os.11083.1.S1_at11/118+28117584..28121148ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os08g45010Os.36409.1.S1_x_at1/118+28117584..28121148ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os08g45030Os.11762.5.S1_x_at11/118+28131639..28137076P-glycoprotein 1, putative, expressed
LOC_Os08g45030Os.11762.1.S2_x_at11/118+28131639..28137076P-glycoprotein 1, putative, expressed
LOC_Os08g45030Os.11762.2.S1_x_at9/118+28131639..28137076P-glycoprotein 1, putative, expressed
LOC_Os08g45030Os.11762.1.S1_x_at2/118+28131639..28137076P-glycoprotein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006817biological_processphosphate transport
GO:0016020cellular_componentmembrane
GO:0005315molecular_functioninorganic phosphate transporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015114molecular_functionphosphate transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50055.1.S1_at--222--5951Chr08:28112800..28112824 (25 bp)
GAGCAAGACGGAGCACGGGTACCCT
LOC_Os08g45000
Os.50055.1.S1_at--309--4531Chr08:28112968..28112992 (25 bp)
GCCGCCCCTGCAAACTGTACTGTAG
LOC_Os08g45000
Os.50055.1.S1_at--524--2391Chr08:28112979..28113003 (25 bp)
AAACTGTACTGTAGCGCTGTCGCCG
LOC_Os08g45000
Os.50055.1.S1_at--478--9331Chr08:28112998..28113022 (25 bp)
TCGCCGTCTGCATATCTATCTATAT
LOC_Os08g45000
Os.50055.1.S1_at--828--331Chr08:28113023..28113047 (25 bp)
ATACATGCAGATATATAGCCACCAT
LOC_Os08g45000
Os.50055.1.S1_at--343--351Chr08:28113053..28113077 (25 bp)
ATAACTGATCGATCGAGACCAGAGA
LOC_Os08g45000
Os.50055.1.S1_at--185--6011Chr08:28113067..28113091 (25 bp)
GAGACCAGAGAAGATCGATCGAAGA
LOC_Os08g45000
Os.50055.1.S1_at--616--6391Chr08:28113079..28113103 (25 bp)
GATCGATCGAAGAAACCGCCAGTTG
LOC_Os08g45000
Os.50055.1.S1_at--834--4051Chr08:28113086..28113110 (25 bp)
CGAAGAAACCGCCAGTTGATATATA
LOC_Os08g45000
Os.50055.1.S1_at--626--6651Chr08:28113100..28113124 (25 bp)
GTTGATATATAACTGGCCTGGCTAT
LOC_Os08g45000
Os.50055.1.S1_at--120--8471Chr08:28113113..28113137 (25 bp)
TGGCCTGGCTATCCACTATATATAT
LOC_Os08g45000
Target Sequence 
GAGCAAGACGGAGCACGGGTACCCTCCGGGCATCGGCGTCCGCAACTCGCTCTTCCTGCTCGCCGCCTGCAACCTGCTGG
GCCTGCTCTTCACCTTCCTCGTGCCGGAGTCCAAGGGGAAGTCGCTGGAGGAGATGTCCGGCGACGCCGAGGCCCAGGAG
GAGGCGCCGCCGCCCCTGCAAACTGTACTGTAGCGCTGTCGCCGTCTGCATATCTATCTATATATACATGCAGATATATA
GCCACCATATAATATAACTGATCGATCGAGACCAGAGAAGATCGATCGAAGAAACCGCCAGTTGATATATAACTGGCCTG
GCTATCCACTATATATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50055.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis