Browse Element(s) Details


Os.10827.1.S1_x_at

Description gb:NM_185876.1
DB_XREF= gi:34898837
GEN=OJ1058_A12.17
TID=Os.10827.1
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10827 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative TNP2 (B1110C07.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ1058_A12.17 (OJ1058_A12.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2881011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g3628011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g3046011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g2013011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g3976011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g2759011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g4497011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g5004011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g1668011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g2391011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g3742011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g3524011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g4223011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g3785011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g1123011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g1154011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g4146011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g5926011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g0881011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g2501010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g6245010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g4958010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g2375010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g3761010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g3283010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g1982010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g0182010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g0561010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g1245010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g3053010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g4909010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g1193010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g1429410/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g3601010/11transposon protein, putative, unclassified
LOC_Os04g2367010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g402509/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g337609/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g030409/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g266909/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g169009/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g128409/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g459009/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g292309/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g637609/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g260909/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g243109/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g042909/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g330509/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g420108/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g166608/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g142808/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g081508/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g327408/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g122308/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g290208/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g128108/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g249407/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g485507/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g042407/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g136207/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g431107/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g228807/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g389006/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g127306/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g246406/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g093106/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g236306/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g299306/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g340205/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g131805/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g238105/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g160105/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g062704/11hypothetical protein
LOC_Os07g138604/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g239204/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g062604/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g253303/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g470503/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g266103/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g458801/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g28770Os.7253.1.S1_at11/1112+17003337..17005898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g28780OsAffx.19875.1.S1_x_at11/1112+17009604..17009849hypothetical protein
LOC_Os12g28780OsAffx.19875.1.S1_at11/1112+17009604..17009849hypothetical protein
LOC_Os12g28790OsAffx.19876.1.S1_x_at11/1112+17015285..17016043hypothetical protein
LOC_Os12g28800OsAffx.25936.1.S1_s_at9/1112+17018718..17021756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28800OsAffx.25936.7.S1_s_at8/1112+17018718..17021756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28800OsAffx.25936.2.S1_x_at4/1112+17018718..17021756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28800OsAffx.25936.5.S1_x_at2/1112+17018718..17021756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28810Os.10827.1.S1_x_at11/1112+17025151..17029849transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28810Os.46055.2.S1_x_at5/1112+17025151..17029849transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28820OsAffx.19877.1.S1_at11/1112+17032066..17032857hypothetical protein
LOC_Os12g28830OsAffx.21171.4.S1_x_at3/1112+17036501..17042406retrotransposon protein, putative, unclassified
LOC_Os12g28830OsAffx.20729.1.S1_x_at1/1112+17036501..17042406retrotransposon protein, putative, unclassified
LOC_Os12g28830OsAffx.10158.1.S1_x_at1/1112+17036501..17042406retrotransposon protein, putative, unclassified
LOC_Os12g28830OsAffx.21171.5.S1_x_at1/1112+17036501..17042406retrotransposon protein, putative, unclassified
LOC_Os12g28830OsAffx.21171.4.S1_at1/1112+17036501..17042406retrotransposon protein, putative, unclassified
LOC_Os12g28840NANA12+17043737..17044306retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g28850OsAffx.22711.4.A1_x_at1/1112+17046781..17050411retrotransposon protein, putative, unclassified
LOC_Os12g28850OsAffx.22927.1.S1_x_at1/1112+17046781..17050411retrotransposon protein, putative, unclassified
LOC_Os12g28850OsAffx.20380.1.S1_x_at1/1112+17046781..17050411retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10827.1.S1_x_at--280--37163Chr12:17310226..17310250 (25 bp)
CTGAAGAACCGAATTGCCAGGTTGC
LOC_Os12g29230
Os.10827.1.S1_x_at--1068--10566Chr12:17310287..17310311 (25 bp)
AGGGTCCTGAATGGAGTGCCACCAC
LOC_Os12g29230
Os.10827.1.S1_x_at--92--3166Chr12:17310328..17310352 (25 bp)
ATAAATGGATACACCTTTCACACGG
LOC_Os12g29230
Os.10827.1.S1_x_at--324--54961Chr12:17310381..17310405 (25 bp)
GAACAGTGGGTTACGCATCGAGGCT
LOC_Os12g29230
Os.10827.1.S1_x_at--430--66362Chr12:17310497..17310521 (25 bp)
GTTGTCGATGGGTCGATCTTCGCAA
LOC_Os12g29230
Os.10827.1.S1_x_at--203--103370Chr12:17310543..17310567 (25 bp)
TTTCACCACTGTCAACTTGGCTAAC
LOC_Os12g29230
Os.10827.1.S1_x_at--48--160Chr12:6057317..6057341 (25 bp)
GCGTACAAGGATGAACCGTTCGTTC
LOC_Os12g11230
Os.10827.1.S1_x_at--481--67165Chr12:14608743..14608767 (25 bp)
GTTCGTTCTCGCCAAACAAGTTGTT
LOC_Os12g25330
Os.10827.1.S1_x_at--669--11165Chr12:17310615..17310639 (25 bp)
AGTGTTCTACATAGTTGACCCGTGT
LOC_Os12g29230
Os.10827.1.S1_x_at--1136--40567Chr12:17310705..17310729 (25 bp)
CGAGGATGATTACAACCAGCACGTC
LOC_Os12g29230
Os.10827.1.S1_x_at--530--50947Chr12:7346773..7346797 (25 bp)
GCACGTCCACGGCATAGGTCAAGAA
LOC_Os12g13180
Target Sequence 
CTGAAGAACCGAATTGCCAGGTTGCAGAACTTGNCTAGTGAAACACTTCAGTGNTTGTCACAGGGTCCTGAATGGAGTGC
CACCACCTGGCAAGGATATGACATAAATGGATACACCTTTCACACGGTNAAGCAAGACAGCAAATGCACAGTGCAGAACA
GTGGGTTACGCATCGAGGCTNCTAGTGACGGTGGTCGTCGTGATCAATACTATGGTANAGTTGAGCAAATATTGGAGCTA
GATTACTTGAAGTTCAAANTCCCGTTGTTTCGTTGTCGATGGGTCGATCTTCGCAATGTAAAAGTTGACAATGAAGGTTT
CACCACTGTCAACTTGGCTAACAACGCGTACAAGGATGAACCGTTCGTTCTCGCCAAACAAGTTGTTCAAGTGTTCTACA
TAGTTGACCCGTGTAACAAGAAACTACATGTTGTTCGTGAAGGGAAAAGGAGAATTGTTGGATTGGACAANATTGCAGAC
GAGGATGATTACAACCAGCACGTCCACGGCATAGGTCAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10827.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis