Browse Element(s) Details


OsAffx.21171.5.S1_x_at

Description gb:NM_184744.1
DB_XREF= gi:34896577
GEN=OSJNBa0026A15.8
TID=OsAffx.21171.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative gag-pol precursor (OSJNBa0026A15.8), mRNA.
PROD=putative gag-pol precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3686011/11retrotransposon protein, putative, unclassified
LOC_Os05g396203/11retrotransposon protein, putative, unclassified
LOC_Os02g142203/11retrotransposon protein, putative, unclassified
LOC_Os01g324003/11retrotransposon protein, putative, unclassified
LOC_Os04g148603/11retrotransposon protein, putative, unclassified
LOC_Os07g426802/11transposon protein, putative, unclassified
LOC_Os09g398201/11retrotransposon protein, putative, unclassified
LOC_Os12g288301/11retrotransposon protein, putative, unclassified
LOC_Os03g614001/11retrotransposon protein, putative, unclassified
LOC_Os01g340401/11retrotransposon protein, putative, unclassified
LOC_Os01g215301/11retrotransposon protein, putative, unclassified
LOC_Os12g203001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g152701/11retrotransposon protein, putative, unclassified
LOC_Os05g377601/11retrotransposon protein, putative, unclassified
LOC_Os10g255021/11retrotransposon protein, putative, unclassified
LOC_Os07g494301/11retrotransposon protein, putative, unclassified
LOC_Os04g378301/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36810OsAffx.22712.1.S1_at11/113+20389518..20390136hypothetical protein
LOC_Os03g36830Os.53883.1.S1_at11/113+20398804..20401902expressed protein
LOC_Os03g36860OsAffx.21171.5.S1_x_at11/113+20407701..20410041retrotransposon protein, putative, unclassified
LOC_Os03g36860OsAffx.21171.5.S1_at11/113+20407701..20410041retrotransposon protein, putative, unclassified
LOC_Os03g36870NANA3+20412699..20413484retrotransposon protein, putative, unclassified
LOC_Os03g36880OsAffx.21171.4.S1_at11/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36880OsAffx.21171.4.S1_x_at11/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36880Os.45173.1.S1_x_at3/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36880OsAffx.21171.3.S1_x_at1/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.2.S1_at11/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.2.S1_x_at11/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.1.S1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.4.A1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.20380.2.S1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.8420.1.S1_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22927.1.S1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36900Os.34669.1.S1_at11/113+20431255..20435189RNA-binding protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21171.5.S1_x_at--848--4191Chr03:20409543..20409567 (25 bp)
CCCGGCTGCCTTTGACGTGCTCAAA
LOC_Os03g36860
OsAffx.21171.5.S1_x_at--859--9211Chr03:20409584..20409608 (25 bp)
TCCAGCCGTCGCTCCTAATCATTGG
LOC_Os03g36860
OsAffx.21171.5.S1_x_at--339--3812Chr03:20409595..20409619 (25 bp)
CTCCTAATCATTGGCGTTACTCCGG
LOC_Os03g36860
OsAffx.21171.5.S1_x_at--119--10874Chr03:20409635..20409659 (25 bp)
TTGGCCACGTAGAGCTTCCGGTGAC
LOC_Os03g36860
OsAffx.21171.5.S1_x_at--429--1334Chr07:25551827..25551851 (25 bp)
AGAGCTTCCGGTGACCTTCGGTGAC
LOC_Os07g42680
OsAffx.21171.5.S1_x_at--70--3953Chr03:20409734..20409758 (25 bp)
CGGTTCTAGGCAGACCCGCGTTGGT
LOC_Os03g36860
OsAffx.21171.5.S1_x_at--168--3913Chr03:20409815..20409839 (25 bp)
CTGGTCCCATCACCATTTTTGGTGA
LOC_Os03g36860
OsAffx.21171.5.S1_x_at--436--10254Chr09:9310251..9310275 (25 bp)
TTTGGTGATGTCAAGGTTGCCCTCG
LOC_Os09g15270
OsAffx.21171.5.S1_x_at--283--4152Chr07:25552043..25552067 (25 bp)
CGCGGAGCAGCGTGCAGACAACCTG
LOC_Os07g42680
OsAffx.21171.5.S1_x_at--64--22111Chr12:17040246..17040270 (25 bp)
ACAACCTGGCGGTGGCCACGGAGCC
LOC_Os12g28830
OsAffx.21171.5.S1_x_at--1091--2911Chr03:20409973..20409997 (25 bp)
AAGGAAATGCCCCTTGGCGACGATC
LOC_Os03g36860
Target Sequence 
CCCGGCTGCCTTTGACGTGCTCAAAGCCCCGGGGATGAAGCTCCAGCCGTCGCTCCTAATCATTGGCGTTACTCCGGGGC
ACACATGGCCGCTTGGCCACGTAGAGCTTCCGGTGACCTTCGGTGACTCCACCAACTTCCGCACCGAGCGGATTGACTTC
GATGTGGCGGATCTCAATCTGCCCTACAACGCGGTTCTAGGCAGACCCGCGTTGGTGAAGTTCATGGCCGCCACCCATTA
CGCCTACCTCCAGATGAAGATGCCGGGTCCTGCTGGTCCCATCACCATTTTTGGTGATGTCAAGGTTGCCCTCGCCTGCG
CGGAGCAGCGTGCAGACAACCTGGCGGTGGCCACGGAGCCACAGGCCCCCGAGGCCTCTGCGTCCCGCGCTTCCAAGAAG
CACCTCACCTCGGCTGACGAGGTGCCCGTCAAGGAAATGCCCCTTGGCGACGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21171.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis