Browse Element(s) Details


OsAffx.22927.1.S1_x_at

Description gb:NM_183603.1
DB_XREF= gi:34894333
TID=OsAffx.22927.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g186807/11retrotransposon protein, putative, unclassified
LOC_Os04g086702/11retrotransposon protein, putative, unclassified
LOC_Os03g518102/11retrotransposon protein, putative, unclassified
LOC_Os04g042702/11retrotransposon protein, putative, unclassified
LOC_Os09g010201/11transposon protein, putative, unclassified
LOC_Os07g426901/11retrotransposon protein, putative, unclassified
LOC_Os01g542501/11retrotransposon protein, putative, unclassified
LOC_Os05g297801/11retrotransposon protein, putative, unclassified
LOC_Os08g246801/11retrotransposon protein, putative, unclassified
LOC_Os02g194001/11retrotransposon protein, putative, unclassified, expressed
LOC_Os09g398301/11retrotransposon protein, putative, unclassified
LOC_Os07g220001/11retrotransposon, putative, centromere-specific
LOC_Os08g294801/11retrotransposon protein, putative, unclassified
LOC_Os12g288501/11retrotransposon protein, putative, unclassified
LOC_Os09g081701/11transposon protein, putative, unclassified
LOC_Os05g036501/11retrotransposon protein, putative, unclassified
LOC_Os05g225801/11retrotransposon protein, putative, unclassified
LOC_Os12g395801/11retrotransposon protein, putative, unclassified
LOC_Os03g368901/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18670Os.20120.1.S1_at6/111+10512501..10518060CjMDR1, putative, expressed
LOC_Os01g18670OsAffx.21918.1.S1_x_at1/111+10512501..10518060CjMDR1, putative, expressed
LOC_Os01g18680OsAffx.22927.1.S1_x_at7/111+10536842..10537780retrotransposon protein, putative, unclassified
LOC_Os01g18680OsAffx.8420.1.S1_x_at1/111+10536842..10537780retrotransposon protein, putative, unclassified
LOC_Os01g18690NANA1+10538588..10540496retrotransposon protein, putative, unclassified
LOC_Os01g18700NANA1+10541749..10543926retrotransposon protein, putative, unclassified
LOC_Os01g18710OsAffx.23294.2.S1_at11/111+10546018..10547862hypothetical protein
LOC_Os01g18720OsAffx.23294.3.A1_at11/111+10548616..10549289hypothetical protein
LOC_Os01g18730OsAffx.20135.1.A1_x_at1/111+10556665..10557747hypothetical protein
LOC_Os01g18744Os.3655.1.S1_at11/111+10558108..10562090Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22927.1.S1_x_at--758--9339Chr12:24388229..24388252 (24 bp)
TCGCCGAGCAAACACTGATTCCAGA
LOC_Os12g39580
OsAffx.22927.1.S1_x_at--1040--73Chr01:10536783..10536807 (25 bp)
ATTCCAGATGGGATCCTCCCCTCTG
NONE
OsAffx.22927.1.S1_x_at--816--1774Chr04:1987637..1988147 (25 bp)
ACCGGGAGAGTATCCTGGCCGTGAT
LOC_Os04g04270
OsAffx.22927.1.S1_x_at--406--9951Chr01:10536829..10536853 (25 bp)
TATCCTGGCCGTGATGACGGTCGTC
NONE
OsAffx.22927.1.S1_x_at--500--1531Chr01:10536914..10536938 (25 bp)
AGCAGTGGTGCGACCGCAGGTGGCG
LOC_Os01g18680
OsAffx.22927.1.S1_x_at--579--8451Chr01:10536934..10536958 (25 bp)
TGGCGGTCGGAATGGCGGCTCCAGC
LOC_Os01g18680
OsAffx.22927.1.S1_x_at--116--3451Chr01:10536973..10536997 (25 bp)
CAGGGCGCCCGGTCCTAATCGTGGG
LOC_Os01g18680
OsAffx.22927.1.S1_x_at--437--4412Chr01:10537013..10537037 (25 bp)
GCCAGCGACCCGAAAGGGAAGCGAA
LOC_Os01g18680
OsAffx.22927.1.S1_x_at--266--5411Chr01:10537030..10537054 (25 bp)
GAAGCGAAAAATGTCCGAGTTTGGG
LOC_Os01g18680
OsAffx.22927.1.S1_x_at--159--26914Chr09:62377..62396 (20 bp)
AAGCGGCTCCGGAAGATAGGGCAAA
LOC_Os09g01020
OsAffx.22927.1.S1_x_at--791--10491Chr01:10537742..10537766 (25 bp)
TTCACCTTCGGGTACCTCGGACGAG
LOC_Os01g18680
Target Sequence 
TCGCCGAGCAAACACTGATTCCAGATGGGATCCTCCCCTCTGCAGCGACCGCGACCGGGAGAGTATCCTGGCCGTGATGA
CGGTCGTCGGCGCTGGCAGGGGTCGGTCCCGCCGGAGCGGCGCTGGCGGTGGTGGCGATGGCACGGGCAGCAGTGGTGCG
ACCGCAGGTGGCGGTCGGAATGGCGGCTCCAGCGGGGGCGACGGCTCCAGGGCGCCCGGTCCTAATCGTGGGCCCGGGGG
AGATTCGGCCAGCGACCCGAAAGGGAAGCGAAAAATGTCCGAGTTTGGGCCGCCTTCTCCACCGCATGGAGGGGGCGCCG
AGCGAACGGCGGACCGACCACCGGCGGGCCACAAATGCCCTGCCGCGTCCGGGGTCGGACGGAAGAAGAAGCGGCTCCGG
AAGATAGGGCAAACGGAGCCGTGCCGGGGGAGTTTCATCGAGCCCCCAAAGTGGACCTTCAAACGGCCCCCTCGCAGGGA
TCGGCCCCTCGGTTCACCTTCGGGTACCTCGGACGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22927.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis