Browse Element(s) Details


OsAffx.23294.3.A1_at

Description tigr:9629.m01821
TID=OsAffx.23294.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1872011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18680OsAffx.22927.1.S1_x_at7/111+10536842..10537780retrotransposon protein, putative, unclassified
LOC_Os01g18680OsAffx.8420.1.S1_x_at1/111+10536842..10537780retrotransposon protein, putative, unclassified
LOC_Os01g18690NANA1+10538588..10540496retrotransposon protein, putative, unclassified
LOC_Os01g18700NANA1+10541749..10543926retrotransposon protein, putative, unclassified
LOC_Os01g18710OsAffx.23294.2.S1_at11/111+10546018..10547862hypothetical protein
LOC_Os01g18720OsAffx.23294.3.A1_at11/111+10548616..10549289hypothetical protein
LOC_Os01g18730OsAffx.20135.1.A1_x_at1/111+10556665..10557747hypothetical protein
LOC_Os01g18744Os.3655.1.S1_at11/111+10558108..10562090Transferase family protein, expressed
LOC_Os01g18760NANA1+10569485..10570999hypothetical protein
LOC_Os01g18770NANA1+10572708..10573307hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23294.3.A1_at--450--9351Chr01:10548792..10548816 (25 bp)
TCGCTCCTCGTTGGCTGTGGCGGTA
LOC_Os01g18720
OsAffx.23294.3.A1_at--273--2731Chr01:10548932..10549132 (25 bp)
TAAAATTTGAAGAGCCGTATGGGAA
LOC_Os01g18720
OsAffx.23294.3.A1_at--1140--8011Chr01:10549136..10549160 (25 bp)
GGAGGTTGATTTTTACAGACGCGAT
LOC_Os01g18720
OsAffx.23294.3.A1_at--38--6551Chr01:10549143..10549167 (25 bp)
GATTTTTACAGACGCGATCAGTTAC
LOC_Os01g18720
OsAffx.23294.3.A1_at--66--5811Chr01:10549153..10549177 (25 bp)
GACGCGATCAGTTACGATCTGCCTA
LOC_Os01g18720
OsAffx.23294.3.A1_at--118--3451Chr01:10549161..10549185 (25 bp)
CAGTTACGATCTGCCTACAATCTAA
LOC_Os01g18720
OsAffx.23294.3.A1_at--1149--3171Chr01:10549178..10549202 (25 bp)
CAATCTAAAGAGGTTCTCGTACAGA
LOC_Os01g18720
OsAffx.23294.3.A1_at--203--5632Chr10:18252311..18252330 (20 bp)
GAGGTTCTCGTACAGAAAAATCGTT
NONE
OsAffx.23294.3.A1_at--538--6951Chr01:10549215..10549239 (25 bp)
GTAGAAGTGATATATGTCTGCAATC
LOC_Os01g18720
OsAffx.23294.3.A1_at--907--10111Chr01:10549227..10549251 (25 bp)
TATGTCTGCAATCATATTTACGTGC
LOC_Os01g18720
OsAffx.23294.3.A1_at--722--5191Chr01:10549234..10549258 (25 bp)
GCAATCATATTTACGTGCACATGAC
LOC_Os01g18720
Target Sequence 
TCGCTCCTCGTTGGCTGTGGCGGTAGTGCCGCCCGAGGTCACCGAGCCAGCCGCCGCCCGCTCCCGCTTGGAGGGGAGGA
AGAGAGAAATGAGAGAAGAAATTAATATGAGGAGAGGGGAGGAAGAGGAGATAAGGATGATAAAATTTGAAGAGCCGTAT
GGGAAAATGGAGGTTGATTTTTACAGACGCGATCAGTTACGATCTGCCTACAATCTAAAGAGGTTCTCGTACAGAAAAAT
CGTTTCTGTAGAAGTGATATATGTCTGCAATCATATTTACGTGCACATGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23294.3.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis