Browse Element(s) Details

Os.34669.1.S1_at

Description

gb:AK070576.1
DB_XREF= gi:32980600
TID=Os.34669.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34669 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative RNA-binding protein (OSJNBa0026A15.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023057E01, full insert sequence.
FL= gb:AK070576.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g36900	11/11	RNA-binding protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g36860	OsAffx.21171.5.S1_x_at	11/11	3	+	20407701..20410041	retrotransposon protein, putative, unclassified
LOC_Os03g36860	OsAffx.21171.5.S1_at	11/11	3	+	20407701..20410041	retrotransposon protein, putative, unclassified
LOC_Os03g36870	NA	NA	3	+	20412699..20413484	retrotransposon protein, putative, unclassified
LOC_Os03g36880	OsAffx.21171.4.S1_at	11/11	3	+	20417348..20420242	retrotransposon protein, putative, unclassified
LOC_Os03g36880	OsAffx.21171.4.S1_x_at	11/11	3	+	20417348..20420242	retrotransposon protein, putative, unclassified
LOC_Os03g36880	Os.45173.1.S1_x_at	3/11	3	+	20417348..20420242	retrotransposon protein, putative, unclassified
LOC_Os03g36880	OsAffx.21171.3.S1_x_at	1/11	3	+	20417348..20420242	retrotransposon protein, putative, unclassified
LOC_Os03g36890	OsAffx.22711.2.S1_at	11/11	3	+	20421176..20424576	retrotransposon protein, putative, unclassified
LOC_Os03g36890	OsAffx.22711.2.S1_x_at	11/11	3	+	20421176..20424576	retrotransposon protein, putative, unclassified
LOC_Os03g36890	OsAffx.22711.1.S1_x_at	1/11	3	+	20421176..20424576	retrotransposon protein, putative, unclassified
LOC_Os03g36890	OsAffx.22711.4.A1_x_at	1/11	3	+	20421176..20424576	retrotransposon protein, putative, unclassified
LOC_Os03g36890	OsAffx.20380.2.S1_x_at	1/11	3	+	20421176..20424576	retrotransposon protein, putative, unclassified
LOC_Os03g36890	OsAffx.8420.1.S1_at	1/11	3	+	20421176..20424576	retrotransposon protein, putative, unclassified
LOC_Os03g36890	OsAffx.22927.1.S1_x_at	1/11	3	+	20421176..20424576	retrotransposon protein, putative, unclassified
LOC_Os03g36900	Os.34669.1.S1_at	11/11	3	+	20431255..20435189	RNA-binding protein, putative, expressed
LOC_Os03g36910	Os.36445.1.S1_at	11/11	3	+	20439573..20442118	methyltransferase, FkbM family protein, expressed
LOC_Os03g36920	OsAffx.25389.1.S1_at	11/11	3	+	20442594..20445866	NB-ARC domain containing protein, expressed
LOC_Os03g36930	Os.57569.1.S1_at	6/11	3	+	20447050..20451521	Eukaryotic initiation factor 4A-3, putative, expressed
LOC_Os03g36944	OsAffx.22709.1.S1_x_at	11/11	3	+	20452370..20454531	hypothetical protein
LOC_Os03g36944	OsAffx.13203.1.S1_at	2/11	3	+	20452370..20454531	hypothetical protein
LOC_Os03g36960	Os.30135.2.S1_x_at	11/11	3	+	20455957..20456557	expressed protein
LOC_Os03g36960	Os.30135.1.S1_at	11/11	3	+	20455957..20456557	expressed protein
LOC_Os03g36970	OsAffx.22708.5.S1_x_at	11/11	3	+	20458232..20458825	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970	OsAffx.22708.5.S1_at	11/11	3	+	20458232..20458825	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970	OsAffx.22708.2.S1_x_at	5/11	3	+	20458232..20458825	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970	OsAffx.22708.1.S1_x_at	2/11	3	+	20458232..20458825	retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification

GO id	Type	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0003723	molecular_function	RNA binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.34669.1.S1_at--731--405	1	Chr03:20431899..20431923 (25 bp)	CGATGCGATTGAAGCGGCCGGACTT	LOC_Os03g36900
Os.34669.1.S1_at--361--89	1	Chr03:20431830..20431854 (25 bp)	AGGCGTCGTCGGATTCGCCAATGGC	LOC_Os03g36900
Os.34669.1.S1_at--1017--295	1	Chr03:20431811..20431835 (25 bp)	AATGGCGGACCACTTGCCTGACCAT	LOC_Os03g36900
Os.34669.1.S1_at--630--759	1	Chr03:20431608..20431632 (25 bp)	GGGCATTTGGACTCCCTGATGATGA	LOC_Os03g36900
Os.34669.1.S1_at--205--61	1	Chr03:20431551..20431575 (25 bp)	ATGCCCGACGGAACGCGAGGGTTCA	LOC_Os03g36900
Os.34669.1.S1_at--701--479	1	Chr03:20431455..20431479 (25 bp)	GCTCCGGCGGCTGTGATGATCTAAT	LOC_Os03g36900
Os.34669.1.S1_at--568--1037	1	Chr03:20431419..20431443 (25 bp)	TTTTAGCGCGCTTGTTCGTTAGCAA	LOC_Os03g36900
Os.34669.1.S1_at--1026--321	1	Chr03:20431397..20431421 (25 bp)	CAAGTGGTTGAGTTATTTCTGCAAT	LOC_Os03g36900
Os.34669.1.S1_at--62--935	1	Chr03:20431380..20431404 (25 bp)	TCTGCAATTTTTCAGGTCCGGAATA	LOC_Os03g36900
Os.34669.1.S1_at--99--663	1	Chr03:20431325..20431349 (25 bp)	GTTGTAATATCGACCTTTTGGATTG	LOC_Os03g36900
Os.34669.1.S1_at--919--705	1	Chr03:20431291..20431315 (25 bp)	GTAATTATTTTCTCACTATGTAACA	LOC_Os03g36900

Target Sequence

CGATGCGATTGAAGCGGCCGGACTTCGACCACCTCATGATCTCCGACGACGATCACTCGCCGCAATCCCAGGCGTCGTCG
GATTCGCCAATGGCGGACCACTTGCCTGACCATCACNNNNNNNATNANNNNNGNAAGAAGTCGTGGGGGAGAGGGCGGGG
AAGCAGGCCGCACGCTGCCGCCGGCGGGGCGCCGCAAGCCGCCGCCGCCGCGGCCGGGCATTTGGACTCCCTGATGATGA
TGAGCCCCCGCCACGCGCCGCAGGGGCCGAGGATGCCCGACGGAACGCGAGGGTTCACCATGGGGCGCGGGAGGCCGTCG
CCGGCTGCCGTCCTCCGGAGCTCGCCGGCCCGCGCAGTCGCCGCTCCTGCTCCGGCGGCTGTGATGATCTAATGGTGGTG
GTGTTTTTAGCGCGCTTGTTCGTTAGCAAGTGGTTGAGTTATTTCTGCAATTTTTCAGGTCCGGAATAAATTTTGAATTC
GGAATTAGTAAATACCAAGTTGTAATATCGACCTTTTGGATTGGGTCTAGTAGTAATTATTTTCTCACTATGTAACA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis