Browse Element(s) Details


OsAffx.22708.5.S1_at

Description gb:NM_184756.1
DB_XREF= gi:34896601
GEN=OSJNBa0026A15.18
TID=OsAffx.22708.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0026A15.18), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3697011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g0729010/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g121803/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36900Os.34669.1.S1_at11/113+20431255..20435189RNA-binding protein, putative, expressed
LOC_Os03g36910Os.36445.1.S1_at11/113+20439573..20442118methyltransferase, FkbM family protein, expressed
LOC_Os03g36920OsAffx.25389.1.S1_at11/113+20442594..20445866NB-ARC domain containing protein, expressed
LOC_Os03g36930Os.57569.1.S1_at6/113+20447050..20451521Eukaryotic initiation factor 4A-3, putative, expressed
LOC_Os03g36944OsAffx.22709.1.S1_x_at11/113+20452370..20454531hypothetical protein
LOC_Os03g36944OsAffx.13203.1.S1_at2/113+20452370..20454531hypothetical protein
LOC_Os03g36960Os.30135.2.S1_x_at11/113+20455957..20456557expressed protein
LOC_Os03g36960Os.30135.1.S1_at11/113+20455957..20456557expressed protein
LOC_Os03g36970OsAffx.22708.5.S1_x_at11/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970OsAffx.22708.5.S1_at11/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970OsAffx.22708.2.S1_x_at5/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970OsAffx.22708.1.S1_x_at2/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36980OsAffx.22708.3.S1_x_at11/113+20462201..20463295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36980OsAffx.22708.4.S1_x_at7/113+20462201..20463295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37000OsAffx.22706.1.S1_at11/113+20466138..20468283hypothetical protein
LOC_Os03g37000OsAffx.16865.1.S1_at1/113+20466138..20468283hypothetical protein
LOC_Os03g37000OsAffx.16865.1.S1_x_at1/113+20466138..20468283hypothetical protein
LOC_Os03g37010Os.3318.1.S1_at11/113+20470072..20473869glycosyltransferase, putative, expressed
LOC_Os03g37020NANA3+20474531..20475070hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22708.5.S1_at--1088--7634Chr02:3738895..3738919 (25 bp)
GGGAGCACTTCCCTGACTGTGTTCC
LOC_Os02g07290
OsAffx.22708.5.S1_at--613--8074Chr02:3738896..3738920 (25 bp)
GGAGCACTTCCCTGACTGTGTTCCG
LOC_Os02g07290
OsAffx.22708.5.S1_at--259--5953Chr02:3738897..3738921 (25 bp)
GAGCACTTCCCTGACTGTGTTCCGT
LOC_Os02g07290
OsAffx.22708.5.S1_at--124--1493Chr02:3738898..3738922 (25 bp)
AGCACTTCCCTGACTGTGTTCCGTT
LOC_Os02g07290
OsAffx.22708.5.S1_at--739--2054Chr02:3738901..3738925 (25 bp)
ACTTCCCTGACTGTGTTCCGTTGAT
LOC_Os02g07290
OsAffx.22708.5.S1_at--575--3633Chr02:3738902..3738926 (25 bp)
CTTCCCTGACTGTGTTCCGTTGATA
LOC_Os02g07290
OsAffx.22708.5.S1_at--487--10653Chr02:3738903..3738927 (25 bp)
TTCCCTGACTGTGTTCCGTTGATAT
LOC_Os02g07290
OsAffx.22708.5.S1_at--905--9313Chr02:3738904..3738928 (25 bp)
TCCCTGACTGTGTTCCGTTGATATT
LOC_Os02g07290
OsAffx.22708.5.S1_at--992--6695Chr05:5153760..5153784 (25 bp)
GTTCCGTTGATATTGATCATGCAGA
NONE
OsAffx.22708.5.S1_at--315--9295Chr05:5153762..5153786 (25 bp)
TCCGTTGATATTGATCATGCAGATC
NONE
OsAffx.22708.5.S1_at--217--10233Chr07:6813638..6813662 (25 bp)
TATTGATCATGCAGATCAGTACATC
LOC_Os07g12180
Target Sequence 
GGGAGCACTTCCCTGACTGTGTTCCGTTGATATTGATCATGCAGATCAGTACATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22708.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis