Browse Element(s) Details


OsAffx.22708.2.S1_x_at

Description gb:NM_195791.1
DB_XREF= gi:37532941
TID=OsAffx.22708.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0027A14.25), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1877011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g092706/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g072906/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g121806/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g369705/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g165805/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g199203/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g321191/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18730Os.24831.1.S1_x_at9/1110+9188282..9189415retrotransposon protein, putative, unclassified
LOC_Os10g18730Os.24831.3.S1_x_at9/1110+9188282..9189415retrotransposon protein, putative, unclassified
LOC_Os10g18730Os.24831.3.S1_s_at1/1110+9188282..9189415retrotransposon protein, putative, unclassified
LOC_Os10g18730Os.24831.4.S1_x_at1/1110+9188282..9189415retrotransposon protein, putative, unclassified
LOC_Os10g18740Os.26886.1.S1_x_at3/1110+9193232..9201170transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18740Os.26886.3.S1_x_at1/1110+9193232..9201170transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18750OsAffx.6693.1.S1_at11/1110+9203138..9204482hypothetical protein
LOC_Os10g18750OsAffx.10222.1.S1_x_at2/1110+9203138..9204482hypothetical protein
LOC_Os10g18750OsAffx.21755.1.S1_x_at1/1110+9203138..9204482hypothetical protein
LOC_Os10g18750Os.51841.1.S1_x_at1/1110+9203138..9204482hypothetical protein
LOC_Os10g18760Os.8510.1.S1_at11/1110+9210026..9211586jasmonate-induced protein, putative, expressed
LOC_Os10g18770OsAffx.22708.2.S1_at11/1110+9212522..9215278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18770OsAffx.22708.2.S1_x_at11/1110+9212522..9215278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18770OsAffx.22708.5.S1_x_at6/1110+9212522..9215278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18770OsAffx.22708.1.S1_x_at4/1110+9212522..9215278retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18780OsAffx.22708.4.S1_x_at11/1110+9216448..9217545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18780OsAffx.22708.3.S1_x_at7/1110+9216448..9217545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18790OsAffx.25936.2.S1_x_at11/1110+9230516..9233250transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18790OsAffx.25936.1.S1_s_at9/1110+9230516..9233250transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18790OsAffx.25936.7.S1_s_at9/1110+9230516..9233250transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18790OsAffx.25936.5.S1_x_at2/1110+9230516..9233250transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18800OsAffx.18294.1.S1_at10/1110+9236095..9237547hypothetical protein
LOC_Os10g18800OsAffx.23696.1.S1_x_at1/1110+9236095..9237547hypothetical protein
LOC_Os10g18800OsAffx.988.1.S1_at1/1110+9236095..9237547hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22708.2.S1_x_at--512--5114Chr02:3738320..3738344 (25 bp)
GCAAATCTTCCGTTATTTACGTGGC
NONE
OsAffx.22708.2.S1_x_at--940--9934Chr05:5153186..5153210 (25 bp)
TACGTGGCACACAAGATCTCGGTTT
LOC_Os05g09270
OsAffx.22708.2.S1_x_at--434--3235Chr05:5153197..5153221 (25 bp)
CAAGATCTCGGTTTATTCTTTAGAA
LOC_Os05g09270
OsAffx.22708.2.S1_x_at--518--2252Chr05:5153223..5153247 (25 bp)
AAATCAAGATTTAACCATGGCGGGA
LOC_Os05g09270
OsAffx.22708.2.S1_x_at--205--6936Chr05:5153301..5153325 (25 bp)
GTATGTGTTTCTCTGTGGTGGTACA
LOC_Os05g09270
OsAffx.22708.2.S1_x_at--585--8597Chr05:5153357..5153381 (25 bp)
TGGTCGCGACATCAACAAATCACTC
LOC_Os05g09270
OsAffx.22708.2.S1_x_at--128--391Chr10:9212785..9212809 (25 bp)
ATCACACCAACTCCAATCATTATTT
LOC_Os10g18770
OsAffx.22708.2.S1_x_at--499--1278Chr05:5153499..5153523 (25 bp)
AGATAATTCAGCTTGTGTTGCACAA
LOC_Os05g09270
OsAffx.22708.2.S1_x_at--87--7777Chr05:5153614..5153638 (25 bp)
GGTGACTCTCACCAAGACTAGTGAA
NONE
OsAffx.22708.2.S1_x_at--782--1156Chr05:5153661..5153685 (25 bp)
AGTCTTTGCCAACTAGTGTTTTTGA
NONE
OsAffx.22708.2.S1_x_at--114--1457Chr05:5153685..5153709 (25 bp)
AGAAGCTTGTGCATGGCATCGGTAT
NONE
Target Sequence 
GCAAATCTTCCGTTATTTACGTGGCACACAAGATCTCGGTTTATTCTTTAGAAAAAATCAAGATTTAACCATGGCGGGAT
ATGCTGATGCTGGATATTTGTCAGACCCCCATAAAGCATTGTCACAGACTAGGTATGTGTTTCTCTGTGGTGGTACAGCC
ATATCATGGAAGTCAACGAAGCAGACGATGGTCGCGACATCAACAAATCACTCGGAGATTATAGCATTATTTGAAGCGAG
CAAGGAATGCATGTGGTTGAGGAGGGTGATACAACATGTACAGAATACATGTGGGCTAAATATCACACCAACTCCAATCA
TTATTTATGAAGATAATTCAGCTTGTGTTGCACAAATACAAATGGTTTATGTGAAGATGAGTCTCACAAAACATATATCG
CCTAAATTCTTTTATATGCATGAATTGCAAAAGAAAGAAGAAATCAAGGTGACTCTCACCAAGACTAGTGAAAATCTCGC
AGATTTATTTACTAAGTCTTTGCCAACTAGTGTTTTTGAGAAGCTTGTGCATGGCATCGGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22708.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis