Browse Element(s) Details


Os.26886.1.S1_x_at

Description gb:NM_196461.1
DB_XREF= gi:37534281
TID=Os.26886.1
CNT=8
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26886 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) contains similarity to retrotransposable elements TNP2 (OSJNBa0015J03.17), mRNA.
PROD=contains similarity to retrotransposableelements TNP2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3429011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g2714011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g0761010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g0401010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g230109/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g212809/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g141309/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g144709/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g221608/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g185308/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g351008/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g342008/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g179708/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g238708/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g172308/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g290008/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g257608/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g330107/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g512907/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g255507/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g409207/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g455107/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g303707/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g261907/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g191907/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g406107/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g025006/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g239906/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g231906/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g384306/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g152906/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g205906/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g210306/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g284206/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g377506/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g260906/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g314006/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g578086/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g073605/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g344505/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g013905/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g139205/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g084905/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g294205/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g329504/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g325304/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g104604/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g257304/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g069904/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g110804/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g378603/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g187403/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g329403/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g322003/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g270103/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g153002/11hypothetical protein
LOC_Os02g261802/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g133202/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g326602/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g394201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g249201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g166201/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34230Os.46025.1.S1_at11/111+19202362..19203183hypothetical protein
LOC_Os01g34240NANA1+19205536..19206075hypothetical protein
LOC_Os01g34250OsAffx.22385.1.S1_x_at2/111+19206551..19210963retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g34250OsAffx.20329.1.S1_at1/111+19206551..19210963retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g34260OsAffx.23506.1.S1_at9/111+19214999..19215232hypothetical protein
LOC_Os01g34270OsAffx.23507.1.S1_at11/111+19219586..19220617F-box domain containing protein
LOC_Os01g34290Os.26886.6.S1_s_at11/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290Os.26886.2.S1_s_at11/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290Os.26886.1.S1_x_at11/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.16467.1.S1_at7/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.26148.1.S1_at6/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290Os.26886.3.S1_x_at5/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.26148.1.S1_x_at5/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.31076.1.S1_x_at3/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.16244.1.S1_x_at1/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34300OsAffx.21295.1.S1_at8/111+19234338..19234746hypothetical protein
LOC_Os01g34310NANA1+19237412..19244827retrotransposon protein, putative, unclassified
LOC_Os01g34320OsAffx.2152.1.S1_at11/111+19247667..19248375hypothetical protein
LOC_Os01g34330Os.11689.1.S1_at11/111+19250456..19266126BAH domain containing protein, expressed
LOC_Os01g34330Os.11689.2.S1_at10/111+19250456..19266126BAH domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26886.1.S1_x_at--838--73535Chr11:19013021..19013045 (25 bp)
GTGACAATGTCCACGGATGTCCCAA
LOC_Os11g33010
Os.26886.1.S1_x_at--759--62518Chr11:19013068..19013092 (25 bp)
GATGGGACCGTCTTGGACCATAGAC
LOC_Os11g33010
Os.26886.1.S1_x_at--1006--85551Chr11:14427944..14427968 (25 bp)
TGGATACACATTTTACACCGTCAAA
LOC_Os11g26090
Os.26886.1.S1_x_at--438--74511Chr11:12753982..12754003 (22 bp)
GTGTCCGTATAGATGCATTCCAGGA
LOC_Os11g23010
Os.26886.1.S1_x_at--84--60533Chr11:19013234..19013258 (25 bp)
GAGATCTGGGAGCTAAACTACGTCA
LOC_Os11g33010
Os.26886.1.S1_x_at--18--47935Chr11:14428108..14428132 (25 bp)
GCTGCCGTTGGGTGAATCTACGCAC
LOC_Os11g26090
Os.26886.1.S1_x_at--848--4336Chr11:19013295..19013319 (25 bp)
ATCTACGCACTGGTGTCAAAGCCGA
LOC_Os11g33010
Os.26886.1.S1_x_at--948--64751Chr11:19013358..19013382 (25 bp)
GATACGCCGATGAACCATTTGTACT
LOC_Os11g33010
Os.26886.1.S1_x_at--58--9939Chr11:12754277..12754301 (25 bp)
AGGAGTTGACAACGTCGTCGATGAA
LOC_Os11g23010
Os.26886.1.S1_x_at--1105--70347Chr11:19013519..19013543 (25 bp)
GTAAGACCTCACATTGACCTTGACG
LOC_Os11g33010
Os.26886.1.S1_x_at--927--62938Chr11:19013543..19013567 (25 bp)
GATGATCCCCAAGAGCCTGTGGCAT
LOC_Os11g33010
Target Sequence 
GTGACAATGTCCACGGATGTCCCAAATGAGACAGTACAGTTGTTGGGGATGGGACCGTCTTGGACCATAGACACATGGCA
AGGATACGATATAAATGGATACACATTTTACACCGTCAAACAAGATGACAAAAGCACAGTGCAAAACAGCGGTGTCCGTA
TAGATGCATTCCAGGATCAAGTTGGGTCAAACACATACTACGGCCACATTGAGGAGATCTGGGAGCTAAACTACGTCAAG
TTTAAGGTTCCTTTGTTCCGCTGCCGTTGGGTGAATCTACGCACTGGTGTCAAAGCCGACAAGGAAGGTTTCACTTTAGT
AGATCTATCTAAGGTCGGATACGCCGATGAACCATTTGTACTTGCGAAACAGGTCGAGCAGATATTCTACATAAAAGACC
CTTCAAACAAGAAGATGCACATCGTGAGGGATGGAAAGTGCCGAATTGTAGGAGTTGACAACGTCGTCGATGAAGAAGAA
TACAACCATAATCTTCATGTAAGACCTCACATTGACCTTGACGATGATCCCCAAGAGCCTGTGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26886.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis