Browse Element(s) Details


OsAffx.2152.1.S1_at

Description tigr:9629.m03218
TID=OsAffx.2152.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3432011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34290Os.26886.6.S1_s_at11/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290Os.26886.2.S1_s_at11/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290Os.26886.1.S1_x_at11/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.16467.1.S1_at7/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.26148.1.S1_at6/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290Os.26886.3.S1_x_at5/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.26148.1.S1_x_at5/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.31076.1.S1_x_at3/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.16244.1.S1_x_at1/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34300OsAffx.21295.1.S1_at8/111+19234338..19234746hypothetical protein
LOC_Os01g34310NANA1+19237412..19244827retrotransposon protein, putative, unclassified
LOC_Os01g34320OsAffx.2152.1.S1_at11/111+19247667..19248375hypothetical protein
LOC_Os01g34330Os.11689.1.S1_at11/111+19250456..19266126BAH domain containing protein, expressed
LOC_Os01g34330Os.11689.2.S1_at10/111+19250456..19266126BAH domain containing protein, expressed
LOC_Os01g34350Os.30747.1.S1_at11/111+19267236..19272378RNA dependent RNA polymerase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2152.1.S1_at--1022--8131Chr01:19247720..19247744 (25 bp)
GGAAGACCCTTGTGGTCATGGCCTT
LOC_Os01g34320
OsAffx.2152.1.S1_at--1059--5871Chr01:19247759..19247783 (25 bp)
GAGGGAGAGTCGAAAATCCTTTGAC
LOC_Os01g34320
OsAffx.2152.1.S1_at--380--2031Chr01:19247772..19247796 (25 bp)
AAATCCTTTGACTCGGGCACTAGAC
LOC_Os01g34320
OsAffx.2152.1.S1_at--683--8151Chr01:19247803..19247827 (25 bp)
GGAAAATATCGGGCGCCCTTCTGCA
LOC_Os01g34320
OsAffx.2152.1.S1_at--464--5731Chr01:19247970..19247994 (25 bp)
GACGGCGACTTTGTCCCCGTGAAGG
LOC_Os01g34320
OsAffx.2152.1.S1_at--272--7351Chr01:19247988..19248012 (25 bp)
GTGAAGGCACACCATCGCTGCGACG
LOC_Os01g34320
OsAffx.2152.1.S1_at--224--5371Chr01:19248027..19248051 (25 bp)
GAAGACCAGAGGAGATCACCGAAGT
LOC_Os01g34320
OsAffx.2152.1.S1_at--483--6051Chr01:19248277..19248300 (24 bp)
GAGATTGTTGATGTTCAACACCTTT
LOC_Os01g34320
OsAffx.2152.1.S1_at--637--8791Chr01:19248287..19248311 (25 bp)
TGTTCAACACCTTTAAAACTGATGT
LOC_Os01g34320
OsAffx.2152.1.S1_at--817--3851Chr01:19248305..19248329 (25 bp)
CTGATGTTTCAGATGTTGTAGCAAA
LOC_Os01g34320
OsAffx.2152.1.S1_at--456--8731Chr01:19248321..19248345 (25 bp)
TGTAGCAAAATGTTTCAAGACTGAT
LOC_Os01g34320
Target Sequence 
GGAAGACCCTTGTGGTCATGGCCTTCCCGGGGCATGGGAGAGGGAGAGTCGAAAATCCTTTGACTCGGGCACTAGACGAG
AGGGGAAAATATCGGGCGCCCTTCTGCATCGCCTCATTTCGCACCGCCTCCTCTCCCCCACTTCCCTCGCCCACGCCGCC
TCCTCTCCCCCGCCGACGTTGTCTGTGCCGCCTCCTCCGTCGGGCCGCACCATCAACCATCCGCCGCCGCTTTTCGGCTT
CCTCGACGTCGACGGCGACTTTGTCCCCGTGAAGGCACACCATCGCTGCGACGCCGACGCCCCCCATGAAGACCAGAGGA
GATCACCGAAGTGGAGGAAGAGATTGTTGATGTTCAACACCTTTAAAACTGATGTTTCAGATGTTGTAGCAAAATGTTTC
AAGACTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis