Browse Element(s) Details


Os.11689.1.S1_at

Description gb:AK103167.1
DB_XREF= gi:32988376
TID=Os.11689.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11689 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1147B04.23 (B1147B04.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033121F02, full insert sequence.
FL= gb:AK103167.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3433011/11BAH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34290Os.26886.6.S1_s_at11/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290Os.26886.2.S1_s_at11/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290Os.26886.1.S1_x_at11/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.16467.1.S1_at7/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.26148.1.S1_at6/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290Os.26886.3.S1_x_at5/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.26148.1.S1_x_at5/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.31076.1.S1_x_at3/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.16244.1.S1_x_at1/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34300OsAffx.21295.1.S1_at8/111+19234338..19234746hypothetical protein
LOC_Os01g34310NANA1+19237412..19244827retrotransposon protein, putative, unclassified
LOC_Os01g34320OsAffx.2152.1.S1_at11/111+19247667..19248375hypothetical protein
LOC_Os01g34330Os.11689.1.S1_at11/111+19250456..19266126BAH domain containing protein, expressed
LOC_Os01g34330Os.11689.2.S1_at10/111+19250456..19266126BAH domain containing protein, expressed
LOC_Os01g34350Os.30747.1.S1_at11/111+19267236..19272378RNA dependent RNA polymerase family protein, expressed
LOC_Os01g34360Os.47463.1.S1_x_at3/111+19274199..19275538transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34360Os.14491.2.S1_x_at2/111+19274199..19275538transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34374NANA1+19275668..19283464transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34390Os.17159.1.S1_at11/111+19288165..19295852protoheme IX farnesyltransferase family protein, expressed
LOC_Os01g34390Os.49333.1.S1_at1/111+19288165..19295852protoheme IX farnesyltransferase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11689.1.S1_at--158--4411Chr01:19265675..19265699 (25 bp)
GCCACGAGTAGATCAGACGGTCCAC
LOC_Os01g34330
Os.11689.1.S1_at--194--2171Chr01:19265707..19265731 (25 bp)
ACACCTCTCGTCAGAACTAGTAGCT
LOC_Os01g34330
Os.11689.1.S1_at--194--7911Chr01:19265766..19265790 (25 bp)
GGTTCGCATCGTCATTAGGGAGTTT
LOC_Os01g34330
Os.11689.1.S1_at--1027--10791Chr01:19265822..19265846 (25 bp)
TTGTATGTCGTGTACTACCATCTGA
LOC_Os01g34330
Os.11689.1.S1_at--367--2391Chr01:19265868..19265892 (25 bp)
AAACTCTAGGTTGGCATCCTCCTGT
LOC_Os01g34330
Os.11689.1.S1_at--1098--7231Chr01:19265891..19265915 (25 bp)
GTCGCCTCTAATCGTGTGTTTTAAC
LOC_Os01g34330
Os.11689.1.S1_at--746--3011Chr01:19265929..19265953 (25 bp)
AATGCATTTCAGTGCTGTGGACGCA
LOC_Os01g34330
Os.11689.1.S1_at--313--7011Chr01:19265958..19265982 (25 bp)
GTACTCCTGTACATCGTGAGGGTGT
LOC_Os01g34330
Os.11689.1.S1_at--422--2971Chr01:19265984..19266008 (25 bp)
AATGGATCGTTTTTGGCTACTGCTC
LOC_Os01g34330
Os.11689.1.S1_at--164--8791Chr01:19266010..19266034 (25 bp)
TGTTTTGTGTGTGTACTTCCCATCA
LOC_Os01g34330
Os.11689.1.S1_at--998--5891Chr01:19266044..19266068 (25 bp)
GAGCTGTATCTGTTTGTACCCAAAT
LOC_Os01g34330
Target Sequence 
GCCACGAGTAGATCAGACGGTCCACACGCACTACACCTCTCGTCAGAACTAGTAGCTAGCTAGACACGATTAGAAGAGCA
CGCGCACCCACGGTTCGCATCGTCATTAGGGAGTTTCAGAGATTACGTGTACAGATGTAATTGTGTTTTGTATGTCGTGT
ACTACCATCTGAGGGAGGCTGAGCAGATCAGACAAACTCTAGGTTGGCATCCTCCTGTCGCCTCTAATCGTGTGTTTTAA
CTTGCATCACTGTCAATGCATTTCAGTGCTGTGGACGCAGCCGGTACTCCTGTACATCGTGAGGGTGTCAATGGATCGTT
TTTGGCTACTGCTCATGTTTTGTGTGTGTACTTCCCATCAATTCTGCTCGAGCTGTATCTGTTTGTACCCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis