Browse Element(s) Details


Os.17159.1.S1_at

Description gb:AK061861.1
DB_XREF= gi:32971879
TID=Os.17159.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17159 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative heme A farnesyltransferase homolog (B1074C08.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G11, full insert sequence.
FL= gb:AK061861.1 gb:AK099005.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3439011/11protoheme IX farnesyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34330Os.11689.1.S1_at11/111+19250456..19266126BAH domain containing protein, expressed
LOC_Os01g34330Os.11689.2.S1_at10/111+19250456..19266126BAH domain containing protein, expressed
LOC_Os01g34350Os.30747.1.S1_at11/111+19267236..19272378RNA dependent RNA polymerase family protein, expressed
LOC_Os01g34360Os.47463.1.S1_x_at3/111+19274199..19275538transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34360Os.14491.2.S1_x_at2/111+19274199..19275538transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34374NANA1+19275668..19283464transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34390Os.17159.1.S1_at11/111+19288165..19295852protoheme IX farnesyltransferase family protein, expressed
LOC_Os01g34390Os.49333.1.S1_at1/111+19288165..19295852protoheme IX farnesyltransferase family protein, expressed
LOC_Os01g34400OsAffx.9060.1.S1_at11/111+19299540..19301255transposon protein, putative, Pong sub-class
LOC_Os01g34410Os.41074.1.S1_at3/111+19301812..19303778transposon protein, putative, Pong sub-class
LOC_Os01g34420Os.50056.1.S1_at11/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34420Os.50056.1.S1_x_at11/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34420OsAffx.23508.1.S1_at1/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34420OsAffx.23508.2.S1_at1/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34430OsAffx.11314.1.S1_at10/111+19310796..19315354transcription factor, putative
LOC_Os01g34430Os.41072.1.S1_at4/111+19310796..19315354transcription factor, putative
LOC_Os01g34440OsAffx.9058.1.S1_at11/111+19317445..19318362hypothetical protein
LOC_Os01g34440Os.10191.1.S1_at1/111+19317445..19318362hypothetical protein
LOC_Os01g34450Os.36927.1.S1_at11/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.5.S1_s_at11/111+19319632..19321821expressed protein
LOC_Os01g34450Os.36927.2.S1_x_at11/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.3.S1_at9/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.2.S1_x_at4/111+19319632..19321821expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004659molecular_functionprenyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17159.1.S1_at--1103--8651Chr01:19288732..19288756 (25 bp)
TGGGCCTTACAATTGGAGCTCTATC
LOC_Os01g34390
Os.17159.1.S1_at--1156--10091Chr01:19288664..19288688 (25 bp)
TATGGTAGCCTTTTGTATCTTCCTG
LOC_Os01g34390
Os.17159.1.S1_at--500--10151Chr01:19288649..19288673 (25 bp)
TATCTTCCTGCTTTTATGGCTGGAC
LOC_Os01g34390
Os.17159.1.S1_at--16--10451Chr01:19288636..19288660 (25 bp)
TTATGGCTGGACTTCTGTTGCATCG
LOC_Os01g34390
Os.17159.1.S1_at--687--6671Chr01:19288620..19288644 (25 bp)
GTTGCATCGGCTGCCTAATGAGCAA
LOC_Os01g34390
Os.17159.1.S1_at--1035--7371Chr01:19288507..19288531 (25 bp)
GTGAGGACCGAAAACCTTCTCGTAT
LOC_Os01g34390
Os.17159.1.S1_at--458--4351Chr01:19288430..19288454 (25 bp)
CCAGTACCTATATATGTCTCTACCC
LOC_Os01g34390
Os.17159.1.S1_at--597--7151Chr01:19288415..19288439 (25 bp)
GTCTCTACCCAAGGTCATGAGCTAT
LOC_Os01g34390
Os.17159.1.S1_at--1067--10291Chr01:19288320..19288344 (25 bp)
TTTCCTGATCAAGTACTTTGTCCTT
LOC_Os01g34390
Os.17159.1.S1_at--1014--5591Chr01:19288264..19288288 (25 bp)
GAAATTTAGCTCTTGGGCTCACCTG
LOC_Os01g34390
Os.17159.1.S1_at--694--9571Chr01:19288254..19288278 (25 bp)
TCTTGGGCTCACCTGACTGTAAAAA
LOC_Os01g34390
Target Sequence 
TGGGCCTTACAATTGGAGCTCTATCATTTGTGCTGGAGCCAACCCCCAAAACTGCAAGGAGAATGTTCTATGGTAGCCTT
TTGTATCTTCCTGCTTTTATGGCTGGACTTCTGTTGCATCGGCTGCCTAATGAGCAAAAGGAGCATAATGTCACTCAGAC
GAGTGAAATCACCGGAATTCTTTATGGTGCTGAACAGCAGGATGAAGAACGAGCTAGACAGAAGCGTGAGGACCGAAAAC
CTTCTCGTATTCACTCGCGCCCTCCGGTTGCCTATGCTTCTGTGGCCCCTTTTCCTTTCTTACCAGTACCTATATATGTC
TCTACCCAAGGTCATGAGCTATGAAAGATATTACATGNACTAGGCTTGTGGACGCAATGTTGGTCCATATTTTTTTGGCT
TCCAAAGGAAATTTTCCTGATCAAGTACTTTGTCCTTGATGTTGATATGATTCGAAAATAATGAACAAGAAATTTAGCTC
TTGGGCTCACCTGACTGTAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17159.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis