Browse Element(s) Details


Os.36927.2.S1_x_at

Description gb:NM_193164.1
DB_XREF= gi:34913411
GEN=B1074C08.29
TID=Os.36927.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.36927 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1074C08.29 (B1074C08.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1074C08.29 (B1074C08.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3445011/11expressed protein
LOC_Os09g392306/11prephenate dehydratase family protein, expressed
LOC_Os09g392606/11prephenate dehydratase, putative, expressed
LOC_Os04g333901/11prephenate dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34390Os.17159.1.S1_at11/111+19288165..19295852protoheme IX farnesyltransferase family protein, expressed
LOC_Os01g34390Os.49333.1.S1_at1/111+19288165..19295852protoheme IX farnesyltransferase family protein, expressed
LOC_Os01g34400OsAffx.9060.1.S1_at11/111+19299540..19301255transposon protein, putative, Pong sub-class
LOC_Os01g34410Os.41074.1.S1_at3/111+19301812..19303778transposon protein, putative, Pong sub-class
LOC_Os01g34420Os.50056.1.S1_at11/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34420Os.50056.1.S1_x_at11/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34420OsAffx.23508.1.S1_at1/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34420OsAffx.23508.2.S1_at1/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34430OsAffx.11314.1.S1_at10/111+19310796..19315354transcription factor, putative
LOC_Os01g34430Os.41072.1.S1_at4/111+19310796..19315354transcription factor, putative
LOC_Os01g34440OsAffx.9058.1.S1_at11/111+19317445..19318362hypothetical protein
LOC_Os01g34440Os.10191.1.S1_at1/111+19317445..19318362hypothetical protein
LOC_Os01g34450Os.36927.1.S1_at11/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.5.S1_s_at11/111+19319632..19321821expressed protein
LOC_Os01g34450Os.36927.2.S1_x_at11/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.3.S1_at9/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.2.S1_x_at4/111+19319632..19321821expressed protein
LOC_Os01g34460OsAffx.9057.3.S1_at11/111+19331291..19331875hypothetical protein
LOC_Os01g34470NANA1+19332274..19333839expressed protein
LOC_Os01g34480Os.11827.1.S1_a_at11/111+19336555..19341007NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g34490NANA1+19343199..19347398retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009094biological_processL-phenylalanine biosynthesis
GO:0004664molecular_functionprephenate dehydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36927.2.S1_x_at--1151--1891Chr01:19319955..19319979 (25 bp)
ACGTCGGTGCTGTTCAAGGTGCTGT
LOC_Os01g34450
Os.36927.2.S1_x_at--1154--7613Chr09:22564512..22564536 (25 bp)
GGGACATCAGCCTCACCAAGATCGA
LOC_Os09g39260
Os.36927.2.S1_x_at--1085--9651Chr01:19320007..19320031 (25 bp)
TCACCAAGATCGAGAGCCGGCCACA
LOC_Os01g34450
Os.36927.2.S1_x_at--303--9231Chr01:19320049..19320073 (25 bp)
TCCAGTTCGTCGACGGCGCCAACGT
LOC_Os01g34450
Os.36927.2.S1_x_at--768--3913Chr09:22564593..22564617 (25 bp)
CGGCCAAGCACTTCGAGTACATGTT
LOC_Os09g39260
Os.36927.2.S1_x_at--945--733Chr09:22564613..22564637 (25 bp)
ATGTTCTACATCGACTTCCAGGCGT
LOC_Os09g39260
Os.36927.2.S1_x_at--920--10673Chr09:22564628..22564651 (24 bp)
TTCCAGGCGTCCATGGCGGAGGTCC
LOC_Os09g39260
Os.36927.2.S1_x_at--361--8053Chr09:22564672..22564696 (25 bp)
GGAGATACAGGAGTTCACCTCCTTC
LOC_Os09g39260
Os.36927.2.S1_x_at--1124--9094Chr09:22564704..22564728 (25 bp)
TGCTCGGCAGCTACCCCATGGACAT
LOC_Os09g39260
Os.36927.2.S1_x_at--399--691Chr01:19320202..19320226 (25 bp)
ATGACGCCATGGATGATGATCGATC
LOC_Os01g34450
Os.36927.2.S1_x_at--154--8851Chr01:19320218..19320242 (25 bp)
TGATCGATCAACAAGACTGATGCTC
LOC_Os01g34450
Target Sequence 
ACGTCGGTGCTGTTCAAGGTGCTGTCGGCCTTCGCGTTCCGGGACATCAGCCTCACCAAGATCGAGAGCCGGCCACACCG
CCACCGCCATCCCATCCAGTTCGTCGACGGCGCCAACGTGGGCACGGCCAAGCACTTCGAGTACATGTTCTACATCGACT
TCCAGGCGTCCATGGCGGAGGTCCGCGCTGTCGGAGATACAGGAGTTCACCTCCTTCCTCCGCGTGCTCGGCAGCTACCC
CATGGACATGACGCCATGGATGATGATCGATCAACAAGACTGATGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36927.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis