Browse Element(s) Details


OsAffx.23508.2.S1_at

Description tigr:9629.m03228
TID=OsAffx.23508.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g344201/11transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34374NANA1+19275668..19283464transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34390Os.17159.1.S1_at11/111+19288165..19295852protoheme IX farnesyltransferase family protein, expressed
LOC_Os01g34390Os.49333.1.S1_at1/111+19288165..19295852protoheme IX farnesyltransferase family protein, expressed
LOC_Os01g34400OsAffx.9060.1.S1_at11/111+19299540..19301255transposon protein, putative, Pong sub-class
LOC_Os01g34410Os.41074.1.S1_at3/111+19301812..19303778transposon protein, putative, Pong sub-class
LOC_Os01g34420Os.50056.1.S1_at11/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34420Os.50056.1.S1_x_at11/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34420OsAffx.23508.1.S1_at1/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34420OsAffx.23508.2.S1_at1/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34430OsAffx.11314.1.S1_at10/111+19310796..19315354transcription factor, putative
LOC_Os01g34430Os.41072.1.S1_at4/111+19310796..19315354transcription factor, putative
LOC_Os01g34440OsAffx.9058.1.S1_at11/111+19317445..19318362hypothetical protein
LOC_Os01g34440Os.10191.1.S1_at1/111+19317445..19318362hypothetical protein
LOC_Os01g34450Os.36927.1.S1_at11/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.5.S1_s_at11/111+19319632..19321821expressed protein
LOC_Os01g34450Os.36927.2.S1_x_at11/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.3.S1_at9/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.2.S1_x_at4/111+19319632..19321821expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23508.2.S1_at--366--9991Chr01:19305001..19305122 (25 bp)
TACCACTTCGAAGTTGGCCCGAGTT
LOC_Os01g34420
OsAffx.23508.2.S1_at--713--6271Chr01:19306406..19306430 (25 bp)
GATGTCATGATGTTAGTGCCACCAC
NONE
OsAffx.23508.2.S1_at--1138--9191Chr01:19306422..19306446 (25 bp)
TGCCACCACTCTTCTCAATAAAGGA
NONE
OsAffx.23508.2.S1_at--735--7951Chr01:19306444..19306465 (22 bp)
GGATAAACCAACAAAGATAGCGCTT
NONE
OsAffx.23508.2.S1_at--596--2191NONE
ACAAAGATAGCGCTTCTCCCATCGT
NONE
OsAffx.23508.2.S1_at--107--9331Chr01:19307374..19307398 (25 bp)
TCCCATCGTCTAATGCATTGTCCAA
NONE
OsAffx.23508.2.S1_at--853--4931Chr01:19307388..19307412 (25 bp)
GCATTGTCCAAAAGCATGCAAAGGG
NONE
OsAffx.23508.2.S1_at--260--6251Chr01:19308594..19308618 (25 bp)
GATGGATATTGGACCAACCCTTGCA
NONE
OsAffx.23508.2.S1_at--655--2611Chr01:19308609..19308633 (25 bp)
AACCCTTGCACTTCCTTTCAATGTT
NONE
OsAffx.23508.2.S1_at--487--9011Chr01:19308615..19308639 (25 bp)
TGCACTTCCTTTCAATGTTCAAGAT
NONE
OsAffx.23508.2.S1_at--501--8791Chr01:19308630..19308654 (25 bp)
TGTTCAAGATATCCTTTTCTACTGT
NONE
Target Sequence 
TACCACTTCGAAGTTGGCCCGAGTTTACTTCATGGAAGATCTAAACAAGCTTGCTCGGTGGATGCTCAGAAAAAAAAATC
TTCATTATTTAAGGACCACACCAAAATAGTTGTTTATGTTAGAATGATTTGGGGGTGTGTCCAGGATCAAACCCCATTGA
ACGGCATCTTTGAGAAGGCCACTAGGGTTTGCATAAGTGTGAACTCACATAAAATTAGTGGTGAGAATGAGAATAGGACA
TTCCTTAGTGATAATGAAGATGTCATGATGTTAGTGCCACCACTCTTCTCAATAAAGGATAAACCAACAAAGATAGCGCT
TCTCCCATCGTCTAATGCATTGTCCAAAAGCATGCAAAGGGGAGTTGTACAGCATCGATGGGAGATGGATATTGGACCAA
CCCTTGCACTTCCTTTCAATGTTCAAGATATCCTTTTCTACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23508.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis