Browse Element(s) Details


OsAffx.29486.2.S1_x_at

Description tigr:9634.m04466
TID=OsAffx.29486.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4593011/11hypothetical protein
LOC_Os04g5578011/11hypothetical protein
LOC_Os09g392306/11prephenate dehydratase family protein, expressed
LOC_Os09g392606/11prephenate dehydratase, putative, expressed
LOC_Os01g344504/11expressed protein
LOC_Os08g317301/11hypothetical protein
LOC_Os04g333901/11prephenate dehydratase family protein, expressed
LOC_Os08g332601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45900Os.21014.1.S1_at1/116+27781934..27790012cyclophilin-RNA interacting protein, putative
LOC_Os06g45910Os.21014.1.S1_at11/116+27791517..27797565cyclophilin-RNA interacting protein, putative, expressed
LOC_Os06g45920OsAffx.28124.1.S1_at11/116+27799910..27801151ZmEBE-1 protein, putative
LOC_Os06g45930OsAffx.29486.2.S1_x_at11/116+27809916..27811167hypothetical protein
LOC_Os06g45940Os.49807.1.S1_at11/116+27818966..27826291potassium uptake protein, expressed
LOC_Os06g45940Os.29851.2.S1_x_at1/116+27818966..27826291potassium uptake protein, expressed
LOC_Os06g45950NANA6+27829248..27830319Auxin responsive protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009094biological_processL-phenylalanine biosynthesis
GO:0004664molecular_functionprephenate dehydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29486.2.S1_x_at--428--556Chr09:22563944..22563968 (25 bp)
ATCCCCTGCGACCAGTTCGAGGTGG
LOC_Os09g39260
OsAffx.29486.2.S1_x_at--21--1692Chr04:32988124..32988148 (25 bp)
ACCAGTTCGAGGTGGCCTTTCAGGC
LOC_Os04g55780
OsAffx.29486.2.S1_x_at--545--8755Chr04:32988363..32988387 (25 bp)
TGTACGGGCTCCAGGTGCTCGCCGA
LOC_Os04g55780
OsAffx.29486.2.S1_x_at--330--8095Chr09:22564360..22564384 (25 bp)
GGACGACGCCGGGAACGTGACGCGG
LOC_Os09g39260
OsAffx.29486.2.S1_x_at--555--1915Chr09:22564374..22564398 (25 bp)
ACGTGACGCGGTTCGTGATGCTGGC
LOC_Os09g39260
OsAffx.29486.2.S1_x_at--725--7636Chr09:22564401..22564425 (25 bp)
GGGAGCCCATCATCCCGCGAACGGA
LOC_Os09g39260
OsAffx.29486.2.S1_x_at--1020--1892Chr04:32988458..32988482 (25 bp)
ACGGACCGGCCCTTCAAGACGAGCA
LOC_Os04g55780
OsAffx.29486.2.S1_x_at--515--8412Chr04:32988465..32988489 (25 bp)
GGCCCTTCAAGACGAGCATCGTGTT
LOC_Os04g55780
OsAffx.29486.2.S1_x_at--249--2775Chr09:22564436..22564460 (25 bp)
AAGACGAGCATCGTGTTCGCGCACG
LOC_Os09g39260
OsAffx.29486.2.S1_x_at--705--4075Chr09:22564440..22564464 (25 bp)
CGAGCATCGTGTTCGCGCACGACAG
LOC_Os09g39260
OsAffx.29486.2.S1_x_at--81--1913Chr04:32988509..32988533 (25 bp)
ACGTCGGTGCTGTTCGGTGCTGTCG
LOC_Os04g55780
Target Sequence 
ATCCCCTGCGACCAGTTCGAGGTGGCCTTTCAGGCCGTGGAGCTCTGGATNGCCGACCGCGCCGTCTTCCCCGTCGAGAA
CTCCCGCGCCGTCGTGCCCGTCGAGCATCCCTCGGGGAGCTCACCCTCAACGCCATGGGCCTCAACGTCGCCCGCGAGGC
CTTCGACGACACCGCGGCCGCCGCCGAGCACGTCGTCGCCGCGGGGCTCCGGGACACCGCCGCCATCGCATCCTCNCGCG
CCGCCGACCTGTACGGGCTCCAGGTGCTCGCCGACGGCATNCAGGACGACGCCGGGAACGTGACGCGGTTCGTGATGCTG
GCGCGGGAGCCCATCATCCCGCGAACGGACCGGCCCTTCAAGACGAGCATCGTGTTCGCGCACGACAGGGAGGGGACGTC
GGTGCTGTTCGGTGCTGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29486.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis