Browse Element(s) Details


OsAffx.28124.1.S1_at

Description tigr:9634.m04464
TID=OsAffx.28124.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AJ437283 DD1A protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4592011/11ZmEBE-1 protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45880NANA6+27770299..27775101retrotransposon protein, putative, unclassified, expressed
LOC_Os06g45890Os.53136.1.S1_at10/116+27776577..27779677myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os06g45900Os.21014.1.S1_at1/116+27781934..27790012cyclophilin-RNA interacting protein, putative
LOC_Os06g45910Os.21014.1.S1_at11/116+27791517..27797565cyclophilin-RNA interacting protein, putative, expressed
LOC_Os06g45920OsAffx.28124.1.S1_at11/116+27799910..27801151ZmEBE-1 protein, putative
LOC_Os06g45930OsAffx.29486.2.S1_x_at11/116+27809916..27811167hypothetical protein
LOC_Os06g45940Os.49807.1.S1_at11/116+27818966..27826291potassium uptake protein, expressed
LOC_Os06g45940Os.29851.2.S1_x_at1/116+27818966..27826291potassium uptake protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28124.1.S1_at--850--7391Chr06:27800158..27800180 (23 bp)
GTGATTGATCCAACCACCTATGGTG
LOC_Os06g45920
OsAffx.28124.1.S1_at--725--1791Chr06:27800189..27800213 (25 bp)
ACCCACTTCTTTGTATCTTGGACGG
LOC_Os06g45920
OsAffx.28124.1.S1_at--663--6331Chr06:27800303..27800327 (25 bp)
GATGCATGACATACAGGCTGATTAT
LOC_Os06g45920
OsAffx.28124.1.S1_at--704--2371Chr06:27800335..27800359 (25 bp)
AAACCGGATGCTTTAACTTGGACTG
LOC_Os06g45920
OsAffx.28124.1.S1_at--992--3591Chr06:27800351..27800375 (25 bp)
CTTGGACTGTGACGGTTTTGTACCA
LOC_Os06g45920
OsAffx.28124.1.S1_at--834--8731Chr06:27800369..27800393 (25 bp)
TGTACCAGTAAACGGTGCCCCGGTG
LOC_Os06g45920
OsAffx.28124.1.S1_at--988--7771Chr06:27800382..27800406 (25 bp)
GGTGCCCCGGTGACTCCTGGAGATA
LOC_Os06g45920
OsAffx.28124.1.S1_at--50--4831Chr06:27800891..27800915 (25 bp)
GCTACTCGTATAAGGTGGGCTGGCT
LOC_Os06g45920
OsAffx.28124.1.S1_at--446--4711Chr06:27800909..27800933 (25 bp)
GCTGGCTATGCTCAATCCTACAAAG
LOC_Os06g45920
OsAffx.28124.1.S1_at--270--2991Chr06:27800977..27801001 (25 bp)
AATGTCAGCATCCTTTCAGAATGTT
LOC_Os06g45920
OsAffx.28124.1.S1_at--315--8411Chr06:27801045..27801069 (25 bp)
GGCCTGCTGGTCTCGAAGTTTATGC
LOC_Os06g45920
Target Sequence 
GTGATTGATCCAACCACCTATGGTGACAGCAAAACCCACTTCTTTGTATCTTGGACGGTTTTGATATGGATGCATGACAT
ACAGGCTGATTATTACAATAAAACCGGATGCTTTAACTTGGACTGTGACGGTTTTGTACCAGTAAACGGTGCCCCGGTGA
CTCCTGGAGATACATTAGAACAAGCTAATAACCAAACTAAAATATCATTCAAGATATTTAAGGACAAAAATGATGGAGAT
TGGTGGCTTTACTTTGGATATGACATCAACAATCTCAATCGAGTTGGATTTTGGCCAAAGAATATTTTTAATCGTATGGT
AGATCATGCTACTCGTATAAGGTGGGCTGGCTATGCTCAATCCTACAAAGGGAGCTCCAGTCCCCCAATGGGCAATGGGC
AATTTCCAGGAAAAATGTCAGCATCCTTTCAGAATGTTATGTATGTTGATACCGATGGCCAGCCCTATCCTCCTCCTGTT
TGGCCTGCTGGTCTCGAAGTTTATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28124.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis