Browse Element(s) Details


Os.21014.1.S1_at

Description gb:AK072223.1
DB_XREF= gi:32982246
TID=Os.21014.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21014 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033008G16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013166F20, full insert sequence.
FL= gb:AK099323.1 gb:AK072223.1 gb:AK059079.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4591011/11cyclophilin-RNA interacting protein, putative, expressed
LOC_Os06g459001/11cyclophilin-RNA interacting protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45880NANA6+27770299..27775101retrotransposon protein, putative, unclassified, expressed
LOC_Os06g45890Os.53136.1.S1_at10/116+27776577..27779677myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os06g45900Os.21014.1.S1_at1/116+27781934..27790012cyclophilin-RNA interacting protein, putative
LOC_Os06g45910Os.21014.1.S1_at11/116+27791517..27797565cyclophilin-RNA interacting protein, putative, expressed
LOC_Os06g45920OsAffx.28124.1.S1_at11/116+27799910..27801151ZmEBE-1 protein, putative
LOC_Os06g45930OsAffx.29486.2.S1_x_at11/116+27809916..27811167hypothetical protein
LOC_Os06g45940Os.49807.1.S1_at11/116+27818966..27826291potassium uptake protein, expressed
LOC_Os06g45940Os.29851.2.S1_x_at1/116+27818966..27826291potassium uptake protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0006457biological_processprotein folding
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21014.1.S1_at--267--8091Chr06:27796970..27796994 (25 bp)
GGACTACCACCGTTACAATAAATCT
LOC_Os06g45910
Os.21014.1.S1_at--713--2271Chr06:27796989..27797013 (25 bp)
AAATCTGGTGAACGGAGCTCTAGTA
LOC_Os06g45910
Os.21014.1.S1_at--315--9932Chr06:27797016..27797040 (25 bp)
TACGATGATCGTGGCTACAGCAAGC
LOC_Os06g45910
Os.21014.1.S1_at--930--671Chr06:27797071..27797095 (25 bp)
ATGATGATTACAGACGACAACCGGG
LOC_Os06g45910
Os.21014.1.S1_at--842--8431Chr06:27797157..27797181 (25 bp)
GGCCATGGAAGGAGTGACCGTCACA
LOC_Os06g45910
Os.21014.1.S1_at--1025--10251Chr06:27797321..27797345 (25 bp)
TTTGTCTTGCCTGTTTCTCATCATA
LOC_Os06g45910
Os.21014.1.S1_at--1024--5671Chr06:27797418..27797442 (25 bp)
GACATTATGAGAGCTCCACTGGCTA
LOC_Os06g45910
Os.21014.1.S1_at--721--5831Chr06:27797462..27797486 (25 bp)
GACCTTTTCTTTTCTATACATGCTC
LOC_Os06g45910
Os.21014.1.S1_at--864--3511Chr06:27797480..27797504 (25 bp)
CATGCTCATGGACGTTGTTCTTTTT
LOC_Os06g45910
Os.21014.1.S1_at--924--7631Chr06:27797507..27797531 (25 bp)
GGGACGATCACCATCTGATTGTTGT
LOC_Os06g45910
Os.21014.1.S1_at--226--8811Chr06:27797537..27797561 (25 bp)
TGTTGCCACAACTAGCAGCTTGCTT
LOC_Os06g45910
Target Sequence 
GGACTACCACCGTTACAATAAATCTGGTGAACGGAGCTCTAGTAGATACGATGATCGTGGCTACAGCAAGCACGAGAGCA
GGGGCAAATATAGGGATGGCAATGATGATTACAGACGACAACCGGGAGGTGGCAGTCGATATGGCAGGGATAAGTATGAA
GGTGAACGGCGCTACAGAGAAGATGATGGCCATGGAAGGAGTGACCGTCACAAGAGAGATGAAAGTGATAACAGGAAAAG
AAGCCCAGATACTGGTAAGCATAGAAGAGAAGACGGTGGTCACCGTGAGACAAGCAAGCACAGGGAAAGGAGGCAGAGAG
ATGATAGATAGGTCACTGCATCNACCGTCAGTTTTGTCTTGCCTGTTTCTCATCATACATTGAATTTTGTCATTCTTAAT
CCAAAGATAGCACCAGAACACTAAACATGTAGCTTAGAATCTGCGTGTAGACATTATGAGAGCTCCACTGGCTACAGATT
GTTGTAACTTGTAGACCTTTTCTTTTCTATACATGCTCATGGACGTTGTTCTTTTTGGGGGACGATCACCATCTGATTGT
TGTCGAACTGTTGCCACAACTAGCAGCTTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21014.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis