Browse Element(s) Details


Os.29851.2.S1_x_at

Description gb:NM_193825.1
DB_XREF= gi:34914733
GEN=P0560B06.33
TID=Os.29851.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.29851 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative potassium transporter (P0560B06.33), mRNA.
PROD=putative potassium transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2717011/11Potassium transporter 7, putative, expressed
LOC_Os06g459401/11potassium uptake protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27150Os.15285.1.S1_a_at11/111+15457791..15466325Cullin-1, putative, expressed
LOC_Os01g27160Os.33929.1.S1_at11/111+15472955..15479141Cullin-1, putative, expressed
LOC_Os01g27170Os.29851.1.S1_x_at11/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27170Os.29851.1.S2_at11/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27170Os.29851.2.S1_x_at11/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27170OsAffx.12970.1.S1_s_at1/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27180OsAffx.21138.1.S1_at11/111+15485296..15485751hypothetical protein
LOC_Os01g27190Os.4041.1.S1_at11/111+15487289..15488494C2 domain containing protein, expressed
LOC_Os01g27200OsAffx.11222.1.S1_at11/111+15494958..15497110expressed protein
LOC_Os01g27200OsAffx.14881.1.S1_at1/111+15494958..15497110expressed protein
LOC_Os01g27210Os.7911.1.S1_at11/111+15497241..15498725Glutathione S-transferase IV, putative, expressed
LOC_Os01g27219NANA1+15500532..15500677NA

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009605biological_processresponse to external stimulus
GO:0009826biological_processunidimensional cell growth
GO:0009932biological_processcell tip growth
GO:0016020cellular_componentmembrane
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29851.2.S1_x_at--537--4011Chr01:15479957..15479981 (25 bp)
CGTCGTTCGGCACGGCTACAAGGAC
LOC_Os01g27170
Os.29851.2.S1_x_at--410--6191Chr01:15479923..15479947 (25 bp)
GAGGACACCGACTTCGAGAACGACC
LOC_Os01g27170
Os.29851.2.S1_x_at--684--5971Chr01:15479908..15479932 (25 bp)
GAGAACGACCTCGTGCTGCGGATCG
LOC_Os01g27170
Os.29851.2.S1_x_at--1092--9131Chr01:15479892..15479916 (25 bp)
TGCGGATCGCCGAGTTCGTGCAGAT
LOC_Os01g27170
Os.29851.2.S1_x_at--835--9411Chr01:15479877..15479901 (25 bp)
TCGTGCAGATGGAGGCCGACTTCGA
LOC_Os01g27170
Os.29851.2.S1_x_at--362--9031Chr01:15479667..15479691 (25 bp)
TGCACACGATGCACGAGGCGGAGTC
LOC_Os01g27170
Os.29851.2.S1_x_at--166--9391Chr01:15479610..15479634 (25 bp)
TCGAGGTGGCGAACCAGCACACGGA
LOC_Os01g27170
Os.29851.2.S1_x_at--865--391Chr01:15479524..15479548 (25 bp)
ATCATGGGCCACTCGTACATCAAGG
LOC_Os01g27170
Os.29851.2.S1_x_at--392--6712Chr06:27826016..27826035 (20 bp)
GTTCAAGAAGTTCGCCGTCAACGTC
LOC_Os06g45940
Os.29851.2.S1_x_at--823--4111Chr01:15479450..15479474 (25 bp)
CGCTTTCCTCCGCAAGAATTGCAGA
LOC_Os01g27170
Os.29851.2.S1_x_at--712--5151Chr01:15479439..15479463 (25 bp)
GCAAGAATTGCAGAGGCCCCGGCCT
LOC_Os01g27170
Target Sequence 
CGTCGTTCGGCACGGCTACAAGGACGTGCTCGCCGAGGACACCGACTTCGAGAACGACCTCGTGCTGCGGATCGCCGAGT
TCGTGCAGATGGAGGCCGACTTCGACCAGCGCTGCAGCATCAGCGACGATGGGGTCGTCGCCTCCGTGGAGGTGGAGGGC
CGCATGGCCGTGGTCCCGCGGCCCAGCGACCTTGCCAGGACGGGGCTCCTCATGCGGGAGCCCGGCGAGGAGGAGAGCGT
GGTGGCGCGCGCCGCCGCGGCCGCCAAGCCGGAGTCGCTCATCCACTCGATGCACACGATGCACGAGGCGGAGTCGCCGG
GGTTCGCGAGCCGGCGGCGCGTGCGGTTCGAGGTGGCGAACCAGCACACGGACCCCAGGGTGAAGGAGGAGCTGAGCGCG
CTGGTGGAGGCCAAGCACGCCGGCGTCGCCTACATCATGGGCCACTCGTACATCAAGGCGAGGAAGAGCTCGTCGGTGTT
CAAGAAGTTCGCCGTCAACGTCGCCTACGCTTTCCTCCGCAAGAATTGCAGAGGCCCCGGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29851.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis