Browse Element(s) Details


Os.15285.1.S1_a_at

Description gb:AY336990.1
DB_XREF= gi:33243051
TID=Os.15285.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15285 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) CUL1 mRNA, complete cds.
PROD=CUL1
FL= gb:AK104340.1 gb:AY336990.1 gb:AK064940.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2715011/11Cullin-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27090NANA1+15434210..15437514transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27100OsAffx.11220.1.S1_at11/111+15438398..15438937hypothetical protein
LOC_Os01g27110OsAffx.23412.2.S1_at11/111+15443287..15443784hypothetical protein
LOC_Os01g27110OsAffx.23412.1.S1_x_at4/111+15443287..15443784hypothetical protein
LOC_Os01g27120Os.35465.1.S1_at11/111+15445559..15446622expressed protein
LOC_Os01g27130OsAffx.23413.1.S1_x_at11/111+15447931..15450014hypothetical protein
LOC_Os01g27130OsAffx.23413.2.S1_at11/111+15447931..15450014hypothetical protein
LOC_Os01g27140Os.31088.1.S1_at2/111+15451678..15451989Glutaredoxin-like family protein
LOC_Os01g27150Os.15285.1.S1_a_at11/111+15457791..15466325Cullin-1, putative, expressed
LOC_Os01g27160Os.33929.1.S1_at11/111+15472955..15479141Cullin-1, putative, expressed
LOC_Os01g27170Os.29851.1.S1_x_at11/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27170Os.29851.1.S2_at11/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27170Os.29851.2.S1_x_at11/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27170OsAffx.12970.1.S1_s_at1/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27180OsAffx.21138.1.S1_at11/111+15485296..15485751hypothetical protein
LOC_Os01g27190Os.4041.1.S1_at11/111+15487289..15488494C2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007049biological_processcell cycle
GO:0009639biological_processresponse to red or far red light
GO:0009733biological_processresponse to auxin stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0009911biological_processpositive regulation of flower development
GO:0009960biological_processendosperm development
GO:0000151cellular_componentubiquitin ligase complex
GO:0000794cellular_componentcondensed nuclear chromosome
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15285.1.S1_a_at--302--10831Chr01:15460040..15460064 (25 bp)
TTGTGACACAGTTAAATCTCTCAGA
LOC_Os01g27150
Os.15285.1.S1_a_at--624--711Chr01:15460013..15460037 (25 bp)
ATGATGTTGTTCGATTGCTCCATTC
LOC_Os01g27150
Os.15285.1.S1_a_at--177--6651Chr01:15460008..15460032 (25 bp)
GTTGTTCGATTGCTCCATTCTCTAT
LOC_Os01g27150
Os.15285.1.S1_a_at--572--71Chr01:15460000..15460024 (25 bp)
ATTGCTCCATTCTCTATCTTGTGCA
LOC_Os01g27150
Os.15285.1.S1_a_at--856--3812Chr03:26410662..26410839 (25 bp)
CTCCATTCTCTATCTTGTGCAAAAT
NONE
Os.15285.1.S1_a_at--910--3091Chr01:15459945..15459969 (25 bp)
AATAGATCTATTTCACCAAATGATG
LOC_Os01g27150
Os.15285.1.S1_a_at--695--10511Chr01:15459934..15459958 (25 bp)
TTCACCAAATGATGTCTTCGAGTTC
LOC_Os01g27150
Os.15285.1.S1_a_at--503--6271Chr01:15459924..15459948 (25 bp)
GATGTCTTCGAGTTCAACTCAAAGT
LOC_Os01g27150
Os.15285.1.S1_a_at--268--6071Chr01:15459915..15459939 (25 bp)
GAGTTCAACTCAAAGTTTACTGACA
LOC_Os01g27150
Os.15285.1.S1_a_at--512--3291Chr01:15459905..15459929 (25 bp)
CAAAGTTTACTGACAAGCTGCGAAG
LOC_Os01g27150
Os.15285.1.S1_a_at--1125--10291Chr01:15459900..15459924 (25 bp)
TTTACTGACAAGCTGCGAAGATTAA
LOC_Os01g27150
Target Sequence 
TTGTGACACAGTTAAATCTCTCAGATGATGATGTTGTTCGATTGCTCCATTCTCTATCTTGTGCAAAATACAAGATTCTT
AGCAAAGAACCAAATAATAGATCTATTTCACCAAATGATGTCTTCGAGTTCAACTCAAAGTTTACTGACAAGCTGCGAAG
ATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15285.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis