Browse Element(s) Details


Os.33929.1.S1_at

Description gb:AK073477.1
DB_XREF= gi:32983500
TID=Os.33929.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33929 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cullin-like protein (P0560B06.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033045D14, full insert sequence.
FL= gb:AK073477.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2716011/11Cullin-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27130OsAffx.23413.1.S1_x_at11/111+15447931..15450014hypothetical protein
LOC_Os01g27130OsAffx.23413.2.S1_at11/111+15447931..15450014hypothetical protein
LOC_Os01g27140Os.31088.1.S1_at2/111+15451678..15451989Glutaredoxin-like family protein
LOC_Os01g27150Os.15285.1.S1_a_at11/111+15457791..15466325Cullin-1, putative, expressed
LOC_Os01g27160Os.33929.1.S1_at11/111+15472955..15479141Cullin-1, putative, expressed
LOC_Os01g27170Os.29851.1.S1_x_at11/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27170Os.29851.1.S2_at11/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27170Os.29851.2.S1_x_at11/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27170OsAffx.12970.1.S1_s_at1/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27180OsAffx.21138.1.S1_at11/111+15485296..15485751hypothetical protein
LOC_Os01g27190Os.4041.1.S1_at11/111+15487289..15488494C2 domain containing protein, expressed
LOC_Os01g27200OsAffx.11222.1.S1_at11/111+15494958..15497110expressed protein
LOC_Os01g27200OsAffx.14881.1.S1_at1/111+15494958..15497110expressed protein
LOC_Os01g27210Os.7911.1.S1_at11/111+15497241..15498725Glutathione S-transferase IV, putative, expressed
LOC_Os01g27219NANA1+15500532..15500677NA

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Gene Ontology Classification
GO idTypeName
GO:0007049biological_processcell cycle
GO:0009733biological_processresponse to auxin stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0000151cellular_componentubiquitin ligase complex
GO:0000794cellular_componentcondensed nuclear chromosome
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33929.1.S1_at--977--2891Chr01:15478413..15478436 (24 bp)
AAGGTACCACTTCCTCAAATCGATG
LOC_Os01g27160
Os.33929.1.S1_at--101--9071Chr01:15478489..15478513 (25 bp)
TGCATCTCTTGTGCGCATCATGAAA
LOC_Os01g27160
Os.33929.1.S1_at--306--1231Chr01:15478522..15478546 (25 bp)
AGTTCTGGGCCATCAGCAACTTGTA
LOC_Os01g27160
Os.33929.1.S1_at--357--8831Chr01:15478817..15478841 (25 bp)
TGATTCGGAGAATGCCCAGACCTAC
LOC_Os01g27160
Os.33929.1.S1_at--421--731Chr01:15478856..15478880 (25 bp)
ATGATTGGTCCTGAGGCGACTTGCT
LOC_Os01g27160
Os.33929.1.S1_at--1028--4091Chr01:15478872..15478896 (25 bp)
CGACTTGCTGACTGTTTGTCTGTTT
LOC_Os01g27160
Os.33929.1.S1_at--309--6291Chr01:15478929..15478953 (25 bp)
GATGTTGCCACCAGTAGTCTCTGTT
LOC_Os01g27160
Os.33929.1.S1_at--1093--8771Chr01:15478950..15478974 (25 bp)
TGTTTACTTACATCCACGCATCAGG
LOC_Os01g27160
Os.33929.1.S1_at--1098--1831Chr01:15478965..15478989 (25 bp)
ACGCATCAGGGTTGTACACTCTTTT
LOC_Os01g27160
Os.33929.1.S1_at--1102--9851Chr01:15478979..15479003 (25 bp)
TACACTCTTTTCCTGCTCAAGTGAA
LOC_Os01g27160
Os.33929.1.S1_at--772--9871Chr01:15479067..15479091 (25 bp)
TACATGTTTAGCTTTGACGCCCTTT
LOC_Os01g27160
Target Sequence 
AAGGTACCACTTCCTCAAATCGATGAGAAGAAAAAGGTTGTCGATGATGTCAACAAGGACAGGAGGTTCGCAATTGATGC
ATCTCTTGTGCGCATCATGAAAAGCCGCAAAGTTCTGGGCCATCAGCAACTTGTAGCGGAATGCGTGGAGCAGCTCAGCC
GCATGTTTAAGCCTGACATCAAGATCATCAAGAGGAGGATCGAGGATCTTATCAGCAGGGAGTACTTGGAGCGTGATTCG
GAGAATGCCCAGACCTACAAATACTTGGCTTGATGATTGGTCCTGAGGCGACTTGCTGACTGTTTGTCTGTTTACTCACC
CTCTGGATTCCTAGGGCAGTGCCCTGATGTTGCCACCAGTAGTCTCTGTTTACTTACATCCACGCATCAGGGTTGTACAC
TCTTTTCCTGCTCAAGTGAATGATTAGAGGAAAAACAGATTAGGAGAAGCGGCTATGGCTCGGCTGTGACTGTGAACCAC
ATTTACATGTTTAGCTTTGACGCCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33929.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis