Browse Element(s) Details


Os.7911.1.S1_at

Description gb:AF309382.1
DB_XREF= gi:11177840
TID=Os.7911.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7911 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) clone C63266_1A putative glutathione S-transferase OsGSTF5 mRNA, complete cds.
PROD=putative glutathione S-transferase OsGSTF5
FL= gb:AF309382.1 gb:AK120046.1 gb:AK063796.1 gb:AK101436.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2721011/11Glutathione S-transferase IV, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27160Os.33929.1.S1_at11/111+15472955..15479141Cullin-1, putative, expressed
LOC_Os01g27170Os.29851.1.S1_x_at11/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27170Os.29851.1.S2_at11/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27170Os.29851.2.S1_x_at11/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27170OsAffx.12970.1.S1_s_at1/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27180OsAffx.21138.1.S1_at11/111+15485296..15485751hypothetical protein
LOC_Os01g27190Os.4041.1.S1_at11/111+15487289..15488494C2 domain containing protein, expressed
LOC_Os01g27200OsAffx.11222.1.S1_at11/111+15494958..15497110expressed protein
LOC_Os01g27200OsAffx.14881.1.S1_at1/111+15494958..15497110expressed protein
LOC_Os01g27210Os.7911.1.S1_at11/111+15497241..15498725Glutathione S-transferase IV, putative, expressed
LOC_Os01g27219NANA1+15500532..15500677NA
LOC_Os01g27230Os.27098.2.A1_at11/111+15511948..1551516712-oxophytodienoate reductase 1, putative, expressed
LOC_Os01g27230Os.27098.2.A1_s_at11/111+15511948..1551516712-oxophytodienoate reductase 1, putative, expressed
LOC_Os01g27240Os.50513.1.S1_at11/111+15519726..15522561oxidoreductase, FAD/FMN-binding family protein, expressed
LOC_Os01g27240Os.27098.2.A1_s_at1/111+15519726..15522561oxidoreductase, FAD/FMN-binding family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0009507cellular_componentchloroplast
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7911.1.S1_at--168--1731Chr01:15497848..15497872 (25 bp)
ACCAGAGTTCCTGGGACTCGGAGAA
LOC_Os01g27210
Os.7911.1.S1_at--643--9271Chr01:15497741..15497765 (25 bp)
TCCTGTGGCACTGCATCATCAACAA
LOC_Os01g27210
Os.7911.1.S1_at--305--911Chr01:15497634..15497658 (25 bp)
AGGCTGTCGGGCTCCAGGTACCTCG
LOC_Os01g27210
Os.7911.1.S1_at--948--8591Chr01:15497531..15497555 (25 bp)
TGGTCGACGCGTACCCGCACGTGAA
LOC_Os01g27210
Os.7911.1.S1_at--348--591Chr01:15497451..15497475 (25 bp)
ATGCCACCGGATTTCGGCTTCGGAA
LOC_Os01g27210
Os.7911.1.S1_at--591--9451Chr01:15497438..15497462 (25 bp)
TCGGCTTCGGAAGTGGGAACATACC
LOC_Os01g27210
Os.7911.1.S1_at--409--311Chr01:15497418..15497442 (25 bp)
ATACCATAGTGTGCTTGCTGTTGTC
LOC_Os01g27210
Os.7911.1.S1_at--567--3391Chr01:15497393..15497417 (25 bp)
CAGCTTTGCAGCTTGTTATTAGCAT
LOC_Os01g27210
Os.7911.1.S1_at--989--131Chr01:15497376..15497400 (25 bp)
ATTAGCATGTCTGCATTTCCAATAA
LOC_Os01g27210
Os.7911.1.S1_at--887--291Chr01:15497346..15497370 (25 bp)
ATAGCCAGCTCTGAGAACCTCCAAA
LOC_Os01g27210
Os.7911.1.S1_at--279--2271Chr01:15497279..15497303 (25 bp)
AAATCATGGCGTTGCTTTTTCTTCT
LOC_Os01g27210
Target Sequence 
ACCAGAGTTCCTGGGACTCGGAGAAGGTGGAAGCCTGGAGGAGTCGGCAATGGTGGACGTGTGGCTGGACGTGGAAGCCC
ACCAGCACGAGGCCGCCGTGAGGCCCATCCTGTGGCACTGCATCATCAACAAGTTCGAGGGCCGCGACCGCGACCAGGGC
GTCGTGGACGAGAGCGTCCGGAAGCTGGAGAAGGTGCTCGGGGTGTACGAGGCGAGGCTGTCGGGCTCCAGGTACCTCGC
CGGCGACCGCATCAGCCTCGCGGACCTCAGCCACTTCTCCAACATGCGCTACTTCATGGCGACGGAGTACGCCGGCGTGG
TCGACGCGTACCCGCACGTGAAGGCGTGGTGGGAGGCGCTGCTGGCCAGGCCGACGGTGCAGAAGGTGATGGCCGGCATG
CCACCGGATTTCGGCTTCGGAAGTGGGAACATACCATAGTGTGCTTGCTGTTGTCCAGCTTTGCAGCTTGTTATTAGCAT
GTCTGCATTTCCAATAAATGGGATAGCCAGCTCTGAGAACCTCCAAACAATGTCAATGCTCTGCATCAGGCGCTCGTTGC
AGAAGCAAAAAATCATGGCGTTGCTTTTTCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7911.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis